DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fat-spondin and spon1

DIOPT Version :9

Sequence 1:NP_477435.1 Gene:fat-spondin / 36919 FlyBaseID:FBgn0026721 Length:763 Species:Drosophila melanogaster
Sequence 2:NP_001090741.1 Gene:spon1 / 100036727 XenbaseID:XB-GENE-991006 Length:803 Species:Xenopus tropicalis


Alignment Length:765 Identity:251/765 - (32%)
Similarity:360/765 - (47%) Gaps:136/765 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 RTRGDNGYKLIVADGPNGYVPGKTYNLLLLGSRTHLKVQHFTHFTITA--EAHTGARRPQAASPR 99
            |..|.|.:.|.|...|..|.||.||.:.||.:    ...:|..||:.|  |...|.:....|   
 Frog    50 RKEGYNEFSLRVEGDPEFYKPGNTYRVTLLAA----SPAYFRGFTLIALKEGKEGEKEEDHA--- 107

  Fly   100 RVGRFQLFSDSLTQFNDRCVNTVSEADDLPKTEVQVMWVAPESGSGCVSLSAMVYEGPRAWFADD 164
              |.||:..|..|||...|...|:|:....:|.:||:|.||..|||||.|.|.:.:....:|.|:
 Frog   108 --GTFQIIDDEDTQFMSNCPVAVTESTPRRRTRIQVLWTAPPIGSGCVILKASIVQKKIIYFQDE 170

  Fly   165 GNLSTVICERKPD---AAAAQK---ECCACDEAKYSFVFEGIWSNETHPKDYPFAIWLTHFSDVI 223
            |:|:..:||  ||   ....:|   :||||..|||...|.|.||.:|||||||..  ..|:|.:|
 Frog   171 GSLTKRMC
E--PDLTLEGGNEKPIPDCCACGTAKYRLTFYGNWSEKTHPKDYPRR--ANHWSAII 231

  Fly   224 GASHESNFSFWGENHIATAGFRSLAEWGSPAALETELRANGPKLRTLIKAAG---LWYP-NVNQN 284
            |.||...:..|.....|:.|.:.:||.|||..:|.|:|..|.::.|:|||..   .|.| ||...
 Frog   232 GGSHSKEYVLWEYGGQASDGVKQVAELGSPVKMEEEIRQKGDEVLTVIKAKAQWPAWQPLNVRAA 296

  Fly   285 TSSKFRVDRKHPKVSLVSMFGPSPDWVVGISGLDLCTEDCSWKESMDFDLFPWDAGTDSGISYMS 349
            .|::|.|||....:|.::|.||||||.||:|..||||::|.|.:.:..||.|||||||||::|.|
 Frog   297 PSAEFSVDRSRHLMSFLAMMGPSPDWNVGLSSEDLCTKECGWVQKVIQDLIPWDAGTDSGVTYES 361

  Fly   350 PNSETQPPERMYRITTMYPEDPRAPFYNPKSREMTPLAKLYLRRE-------KIVSRNCDDEFLQ 407
            ||..:.|.:::..:|::  :.|::|||:|:...:.|:|::.:.|.       .||..|.|| .:.
 Frog   362 PNKPSIPQDKIRPLTSL--DHPQSPFYDPEGGPIIPVARVVIERIARKGDQCNIVPDNVDD-IVP 423

  Fly   408 ALQLEVSDDAEEQDTRAECRVGDYSAWSPC-SVSCGKGIRMRSRQYLYPAAADQNKCARQLVAKE 471
            .|   |:::.||.||...|...::|.||.| |.:|.||.|||.|                 :.|.
 Frog   424 DL---VTEEKEEDDTPETCIYSNWSPWSACSSATCDKGKRMRQR-----------------MLKA 468

  Fly   472 MCVAAIPECAD--------GPAQSKDRDDDEGENLANSQSLVGSNGEGAGLCKTSPWSVWSECSA 528
            ....::| |.|        ||..|    |||                 |..|..|.|..||.|||
 Frog   469 QLDLSVP-CPDTQDFEPCMGPGCS----DDE-----------------ASTCMMSEWITWSPCSA 511

  Fly   529 SCGIGITMRTRTFVNHLGRKRCPH------ITIVEKNKCMRPDCTYEQVELPDPQCPTSQWSDWS 587
            |||:|:..|.| :|     |:.|.      :...|..||:..:      |.....|..::|::|.
 Frog   512 SCGMGMRSRER-YV-----KQFPEDGSMCKVPTEETEKCIVNE------ECEPSSCIVTEWAEWE 564

  Fly   588 PCSSTCGRGVTIRTRLLLLENGPDKESCTQRMELHQQKECVNPIDCHINAEQAKDICVQAP--DP 650
            .||:|||.|:..|.|::.: ...|...|  :.:..:.::|:.| :||...      ||.:|  :.
 Frog   565 ECSATCGMGMKKRHRMIKM-TPADGSMC--KADTTEVEKCMMP-ECHTIP------CVLSPWSEW 619

  Fly   651 GPCRGTYMRYAYDPQNQHCYSFTYGGCRGNRNNFLTENDCLNTCN-VLRSPYSSRVDQ-PRACVL 713
            ..|                 |.|.|.....|...|.....|..|| .|:......:.: |.:|.|
 Frog   620 SDC-----------------SVTCGKGTRTRQRMLKSPAELGDCNEELKQVEKCMLPECPISCEL 667

  Fly   714 SDWSVWSPCSVSCGVGVSESRRYVVTEPQNGGQPCSKRLVKSRSCAMPAC 763
            ::||.||.|:.|||.|.....|.:..|||.||..|.: .|:.:.|.:..|
 Frog   668 TEWSYWSECNKSCGKGHMIRTRMITMEPQFGGAVCPE-TVQRKKCRLRKC 716

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fat-spondinNP_477435.1 Reeler 24..172 CDD:260081 47/136 (35%)
Spond_N 191..378 CDD:283999 83/190 (44%)
TSP1 428..473 CDD:214559 13/45 (29%)
TSP1 518..566 CDD:214559 19/53 (36%)
TSP1 581..627 CDD:214559 12/45 (27%)
Kunitz_BPTI 643..694 CDD:278443 10/52 (19%)
TSP1 714..763 CDD:214559 18/48 (38%)
spon1NP_001090741.1 Reeler 38..178 CDD:260081 47/136 (35%)
Spond_N 201..388 CDD:368927 83/190 (44%)
TSP_1 442..490 CDD:365867 18/65 (28%)
TSP_1 501..550 CDD:365867 19/60 (32%)
TSP_1 558..606 CDD:365867 14/51 (27%)
TSP_1 614..661 CDD:365867 11/63 (17%)
TSP_1 668..716 CDD:365867 18/48 (38%)
TSP_1 755..803 CDD:365867
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 181 1.000 Domainoid score I3409
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D240419at33208
OrthoFinder 1 1.000 - - FOG0003147
OrthoInspector 1 1.000 - - otm47545
Panther 1 1.100 - - O PTHR11311
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2543
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.110

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