DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-6 and AT1G43245

DIOPT Version :10

Sequence 1:NP_611182.1 Gene:SmydA-6 / 36917 FlyBaseID:FBgn0034183 Length:498 Species:Drosophila melanogaster
Sequence 2:NP_001322450.1 Gene:AT1G43245 / 840925 AraportID:AT1G43245 Length:573 Species:Arabidopsis thaliana


Alignment Length:562 Identity:103/562 - (18%)
Similarity:172/562 - (30%) Gaps:199/562 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 VRAGETLLLENPIV--VLPLMG-------ERRCSKCF-----------------NLTESFCRKCR 68
            :||.|.:.:...:.  :.||..       ...||.||                 :||:||....:
plant     3 IRAAEDIEIRTDLFPPLSPLASSLYDSFLSSHCSSCFSLLPPSPPQPLYCSAACSLTDSFTNSPQ 67

  Fly    69 LLALCEDCSDHDERDCKRL-----AEMNFSDDQVELLQKKEHTEIQPVLKCLLLREHEETLPLYE 128
            ...........|.|....|     .:.:.|..::..|....|         ||:.:...::.::.
plant    68 FPPEITPILPSDIRTSLHLLNSTAVDTSSSPHRLNNLLTNHH---------LLMADPSISVAIHH 123

  Fly   129 EMSQMDSQLMTRRGTEVWKNYQEHAFTPLDYGGVLAQLRGAADEDLVQGL-LGILDINAYEIRAP 192
            ..:.:.:.:.:.|     ||      |.|:...:.|.|..|.:.....|| |||           
plant   124 AANFIATVIRSNR-----KN------TELEEAAICAVLTNAVEVHDSNGLALGI----------- 166

  Fly   193 EVGGAMRGLYRRA-GLFAHSCTPNLV-------ISIDD---------------EQ---------- 224
                   .||..: ....|||:||..       .|..|               ||          
plant   167 -------ALYNSSFSWINHSCSPNSCYRFVNNRTSYHDVHVTNTETSSNLELQEQVCGTSLNSGN 224

  Fly   225 ----RIKVYANRFIAAGEILYNCYTNVLLGTEERRKILKVGKCFDCSCPRC--QDPTELGTHMSS 283
                ::.|.:.:.|.:||.:...|.::|..|..|:..|.....|.|:|.||  ..|..:.:.:..
plant   225 GNGPKLIVRSIKRIKSGEEITVSYIDLLQPTGLRQSDLWSKYRFMCNCGRCAASPPAYVDSILEG 289

  Fly   284 FIC--SQCSCV---DGYIVRQPDTGIWQCLLNPEHTLKQEFVSNMLERAKEEIFHARDDIYRQ-- 341
            .:.  |:.:.|   ||                  .|.|.|.|..|.:..:|.|    ||....  
plant   290 VLTLESEKTTVGHFDG------------------STNKDEAVGKMNDYIQEAI----DDFLSDNI 332

  Fly   342 ------ELLLAKLSR-------------LLHRNHFLMLDLKQNIASI--LRQILQNMGTRPNKKV 385
                  |::.:.|..             .||..|::.|:....:|:.  :|.|....|.      
plant   333 DPKTCCEMIESVLHHGIQFKEDSQPHCLRLHACHYVALNAYITLATAYRIRSIDSETGI------ 391

  Fly   386 YERKIRLCQEILLVLKVVTPGISRLKAIALYELANTQAEL--ARKMY----TEMEHSANDLLAEL 444
                  :|.            :||:.|.....||.....|  |.:.:    .:...:|.:||.:|
plant   392 ------VCD------------MSRISAAYSLFLAGVSHHLFCAERSFAISAAKFWKNAGELLFDL 438

  Fly   445 ERVEVMLRESLRMLLFEPLATPEGQLTRSMLRELKELQDDIK 486
                      ...||.|.....:.:.|:.::.|......|||
plant   439 ----------APKLLMELSVESDVKCTKCLMLETSNSHRDIK 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-6NP_611182.1 SET_SMYD <185..271 CDD:380997 23/122 (19%)
AT1G43245NP_001322450.1 SET_SMYD <141..275 CDD:380997 32/151 (21%)

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