DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-6 and smyd4

DIOPT Version :10

Sequence 1:NP_611182.1 Gene:SmydA-6 / 36917 FlyBaseID:FBgn0034183 Length:498 Species:Drosophila melanogaster
Sequence 2:NP_001070062.1 Gene:smyd4 / 767654 ZFINID:ZDB-GENE-060929-248 Length:753 Species:Danio rerio


Alignment Length:622 Identity:123/622 - (19%)
Similarity:197/622 - (31%) Gaps:220/622 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 TDDFARKCEIKQNDT--------------LGRFAVALCNVRAGETLLLENPI--VVLPL------ 47
            ||.....|:...|.|              .||..:.:.|..|||.:|.:...  |::|.      
Zfish   167 TDHQLSPCQKTVNSTGHLSDGVSVYFSSDKGRHMLVMENKPAGEVVLEDEAYCSVLIPANIFNTG 231

  Fly    48 ---------MGERRCSKCFNLTESF--CRKCRLLALCEDCSDHDERDCKRLAEMNFSDD------ 95
                     ..:|.|..|.:.:.||  |.||.....|.:....|..|.....|.....|      
Zfish   232 TNKAVETFGTEDRHCHHCLSQSLSFVPCPKCSYARYCGESCQKDAWDQWHQWECPVGADLLAIGV 296

  Fly    96 ----QVELLQKKEHTEIQPVLKCLLLREHEETLPLYEEMSQMDSQLMTRRGTEVWKNYQEH--AF 154
                .:.::.|...||:|..:|  ..::|..|   |:.    ||.:....|.:..|:. :|  .|
Zfish   297 LGHLALRVVLKAGQTEVQMGIK--NTKDHVTT---YKN----DSPVQLSLGGDCGKSL-DHTDCF 351

  Fly   155 TPLDYGGVLAQLRGAADED----------------LVQG------------------------LL 179
            ....|.|:.:.|...|...                .:||                        :|
Zfish   352 HGSSYMGIYSLLPHVAQHSPASRFLMAITMAVIYGKLQGGPPPNKWMSFKDEGVKASWQPEMSML 416

  Fly   180 GI--------LDINAYEIRA----PEVGGAMR---------GLYRRAGLFAHSCTPNLVISID-- 221
            |.        |..||..|.|    .|.|.|::         .::....|..|||:||..||..  
Zfish   417 GATALRHMMQLRCNAQAITAVRVKEESGMAVQSSSEIRIATAIFPVLSLLNHSCSPNTSISFTTG 481

  Fly   222 ----------------DEQR-------IKVYANRFIAAGEILYNCY--TNVLLGTEERRKILKVG 261
                            |..:       :.|.|::.:.||:.:.:||  ....:..:||:::|...
Zfish   482 FQPDPHNQLGCSEGHFDHPKGSRSGVTVTVRASKDLTAGQEILHCYGPHRSRMEVKERQRLLLEQ 546

  Fly   262 KCFDCSCPRCQ-DPTE---------------------LGTHMSSFICSQCSCVDGYIVRQPDT-- 302
            ..|.|.|..|| |.:|                     |.:|...:.||..||  |:.:...|.  
Zfish   547 YFFQCVCQACQRDLSEGSPNAKEHTAPGMKCVKCGKPLQSHTDGYTCSWSSC--GHQISSADVQN 609

  Fly   303 ---GIWQCLLNPEHTLKQEFVSNMLERAKEEIFHARDDI-----YRQELLLAKLSRL-------- 351
               |....|....|.::|:.::..|...:.....|...:     ::.||..| |:||        
Zfish   610 RLQGFQLLLDEAVHLMEQDRLNEALHILQSAFSQANSILTETHPFQGELADA-LARLYASTGEWS 673

  Fly   352 LHRNHFLMLDLKQNIASILRQILQNMGTRPNKKVYERKIRLCQEILLVLKV------------VT 404
            |..:|     ||:::.:|..|.            .|..|.|.:::..:.::            |.
Zfish   674 LAASH-----LKRSLVAIQAQF------------GEDSIELGRQLFKLAQLHFNGRDGVASLSVI 721

  Fly   405 PGISRLKAIALYELANTQAELARKMYTEMEHSANDLL 441
            |...||.::..........||     :||||....||
Zfish   722 PRARRLLSLHCSPRCEELQEL-----SEMEHCLQGLL 753

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-6NP_611182.1 SET_SMYD <185..271 CDD:380997 28/125 (22%)
smyd4NP_001070062.1 NlpI <65..>134 CDD:443815
TPR repeat 68..96 CDD:276809
TPR repeat 101..134 CDD:276809
zf-MYND 246..285 CDD:460312 10/38 (26%)
SET_SMYD4 <352..556 CDD:380934 37/203 (18%)
TPR_12 621..683 CDD:315987 14/67 (21%)
Blue background indicates that the domain is not in the aligned region.

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