DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-6 and SmydA-3

DIOPT Version :9

Sequence 1:NP_611182.1 Gene:SmydA-6 / 36917 FlyBaseID:FBgn0034183 Length:498 Species:Drosophila melanogaster
Sequence 2:NP_001260366.1 Gene:SmydA-3 / 34502 FlyBaseID:FBgn0262599 Length:507 Species:Drosophila melanogaster


Alignment Length:521 Identity:158/521 - (30%)
Similarity:240/521 - (46%) Gaps:78/521 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 IKQNDTLGRFAVALCNVRAGETLLLENPIVVLP-LMGERRCSKCF----NLTESFCRKCRLLALC 73
            ::.:...||:.||...:|....|:.|.|..|.| ..|...|..|:    :..|..|.:|. ..||
  Fly    14 VQWSPVCGRYLVAKGAIRGHGLLIEELPFAVGPKCNGPVVCLGCYEPNPDPEEELCSECG-WPLC 77

  Fly    74 EDCSDHDERDCKRLAEMNFSDDQVELLQKKEHTEIQPVLKC------LLLRE------HEETLPL 126
            .:|:...:....||......|.:....:....:...|.|.|      ||.:|      ..|..|:
  Fly    78 VECAQQADNAHFRLECSQLKDARARFFRLPSGSRHCPQLDCIMPLRVLLAKEANPERWDNEVAPM 142

  Fly   127 --YEEMSQMDSQLMTRRGTEVWKNYQEHAFTPLDYGGVLAQLRGAA------DEDLVQGLLGILD 183
              ::|..|.|:        :||     ||    |...:...|||..      .|:|:..::|:|:
  Fly   143 EHHKEERQRDA--------DVW-----HA----DRVNIAQYLRGPCQLANRFSEELIMQVVGVLE 190

  Fly   184 INAYEIRAPEVGGAMRGLYRRAGLFAHSCTPNLVISI--DDEQRIKVYANRFIAAGEILYNCYTN 246
            :||:|.|:|: |..:|.|:...|:.||:|.||...||  .:..:|::.|...:..|:.|::.||.
  Fly   191 VNAFEARSPK-GYPLRCLFPYTGILAHNCVPNTSRSIYPSEGYKIRLRAMVDLEEGQPLHHSYTY 254

  Fly   247 VLLGTEERRKILKVGKCFDCSCPRCQDPTELGTHMSSFICSQCSCVDGYIV----RQPDTGIWQC 307
            .|.||.:|:|.||.||.|.|.|.||.||||||||.||..|.||:  :|:.|    .:|||. |.|
  Fly   255 TLDGTAQRQKHLKQGKFFTCQCERCLDPTELGTHFSSLKCGQCA--EGFQVPRQPTEPDTS-WNC 316

  Fly   308 LLNPEHTLKQEFVSNMLERAKEEIF------HARDDIYRQELLLAKLSRLLHRNHFLMLDLKQNI 366
            ......|...:.:: ||:..:.|:.      .|...:...|.||.|...|||..||        |
  Fly   317 ANCGSDTSNADALA-MLQSLQSEVNAVQALPMAAKRLEEIERLLRKYKSLLHPLHF--------I 372

  Fly   367 ASILRQILQNMGTR---------PNKKVYERKIRLCQEILLVLKVVTPGISRLKAIALYELANTQ 422
            |:.|||:|..|..|         |:.:: |||..||:::|.||....||:||.:|:.||||....
  Fly   373 ATGLRQLLIEMYGRVQGYEMVQLPDHQL-ERKAELCRQVLRVLNTFEPGLSRTRAMNLYELHVPL 436

  Fly   423 AELARKMYTEMEHSANDLLAELERVEVMLRESLRMLLFEPLATPEGQLTRSMLRELKELQDDIKN 487
            ..||:..:...:....:|.|.|.....:|:|.:.:|.||..::.||.|.....:.||:|...::.
  Fly   437 VLLAKSGFIAGKLKGGELRARLVDAIDLLKECVEILEFEDKSSQEGVLCVVAKQALKQLTLSVEG 501

  Fly   488 L 488
            |
  Fly   502 L 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-6NP_611182.1 SET <179..244 CDD:279228 22/66 (33%)
SmydA-3NP_001260366.1 SET <207..252 CDD:250181 13/44 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 77 1.000 Inparanoid score I1875
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR46455
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2203
65.970

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