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Protein Alignment SmydA-6 and Smyd2

DIOPT Version :9

Sequence 1:	NP_611182.1	Gene:	SmydA-6 / 36917	FlyBaseID:	FBgn0034183	Length:	498	Species:	Drosophila melanogaster
Sequence 2:	NP_996733.1	Gene:	Smyd2 / 289372	RGDID:	727785	Length:	433	Species:	Rattus norvegicus

Alignment Length:	463	Identity:	98/463 - (21%)
Similarity:	177/463 - (38%)	Gaps:	101/463 - (21%)

- Green bases have known domain annotations that are detailed below.

  Fly    21 GRFAVALCNVRAGETLLLENPIVVLPL-MGER--RCSKCFNLTE--SFCRKCRLLALCE-DCSDH 79
            ||...||.....|: ||...|.....| :|||  .|..||...|  |.|.:|:....|: :|...
  Rat    18 GRGLRALRPFHVGD-LLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKE 81

  Fly    80 D----ERDCKRLAEM--NFSDDQVE------LLQKKEHTEIQPVLKCLLLREHEETLPLYEEMSQ 132
            |    :.:|..:...  |::..:..      |.::|.|.|..|..|.|.:||.|..|   :::..
  Rat    82 DWPLHKLECSSMVVFGENWNPSETVRLTARILAKQKMHPERTPSEKLLAVREFESHL---DKLDN 143

  Fly   133 MDSQLMTRRGTEVWKNYQEHAFTPLDYGGVLAQLRGAADEDLVQGLLGILDINAYEIRAPEVGGA 197
            ....|:......:.:.|.:|...| |:..::.             |...::.|.:.|...|:...
  Rat   144 EKKDLIQSDIAALHQFYSKHLEFP-DHSSLVV-------------LFAQVNCNGFTIEDEELSHL 194

  Fly   198 MRGLYRRAGLFAHSCTPNLVISIDDEQRIKVYANRFIAAGEILYNCYTNVLLGTEERRKILKVGK 262
            ...::....|..|||.||::::... ...:|.|.:.|..|:.::..|.::|..||:|...|:...
  Rat   195 GSAIFPDVALMNHSCCPNVIVTYKG-TLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSY 258

  Fly   263 CFDCSCPRC----QDPTELGTHMSSFICSQCSCVDGYIVRQPDTGIWQCLLNPEHTLKQEFVSNM 323
            .|.|.|..|    :|..::.                  :|:        |.||.   :.|.:.:|
  Rat   259 FFTCECRECTTKDKDKAKVE------------------IRK--------LSNPP---QAEAIRDM 294

  Fly   324 LERAK---EEIFHARDDIYRQ--------ELLLAKLSRLLHRNHFLMLDLKQNIASILRQILQNM 377
            :..|:   ||...|:.  |:.        ||...|:|.:...::..||.:          :.|.|
  Rat   295 VRYARNVIEEFRRAKH--YKSPSELLEICELSQEKMSSVFEDSNVYMLHM----------MYQAM 347

  Fly   378 GTRPNKKVYERKIRLCQEILLVLKVVTPGISRLKAIALYELANTQAELARKMYTEMEHSANDLLA 442
            |.....:.:|..::..|      |::.| .|:...:....:|:...:|.| :|..:|:.|....|
  Rat   348 GVCLYMQDWEGALKYGQ------KIIKP-YSKHYPVYSLNVASMWLKLGR-LYMGLENKAAGEKA 404

  Fly   443 ELERVEVM 450
            ..:.:.:|
  Rat   405 LKKAIAIM 412

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.