DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmydA-6 and set-14

DIOPT Version :10

Sequence 1:NP_611182.1 Gene:SmydA-6 / 36917 FlyBaseID:FBgn0034183 Length:498 Species:Drosophila melanogaster
Sequence 2:NP_496323.1 Gene:set-14 / 174662 WormBaseID:WBGene00011068 Length:429 Species:Caenorhabditis elegans


Alignment Length:461 Identity:101/461 - (21%)
Similarity:165/461 - (35%) Gaps:101/461 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 ERRCSKCFNLTESF--CRKCRLLALC-EDCSDHDER----DCKRLAEMN-FSDDQVEL------- 99
            |..|::|.......  |..||.||.| ::|...|.:    :||.:...| .::|.:.|       
 Worm    23 ESYCNQCLTSMAELKKCSACRRLAYCSQECQRADWKLHKVECKAIKTHNEVANDSIRLVMRIAGK 87

  Fly   100 LQKKEHTEIQP-----VLKCLLLREHEETLPLYEEMSQMDSQLMTRRGTEVWKNYQEHAFTPLDY 159
            |.:.|..||:.     |.:.....||..:....:|.|.:             |.|.:.|..|   
 Worm    88 LSRNEDGEIEAYYIPGVARNFQNLEHHPSSYDADEESFV-------------KEYFQFAIAP--- 136

  Fly   160 GGVLAQLRGAADEDLVQGLLGILDINAYEIRAPEVGGAMRGLYRRAGLFAHSCTPNLVISIDDEQ 224
                     ..|.||::.:...:.||::.:..........||..:.....|||.|...:...:..
 Worm   137 ---------HPDRDLIKLIFQKVSINSFVVGNSTGNPIGVGLCIKLSAANHSCKPLTRVCYRNRT 192

  Fly   225 RIKV-YANRFIAAGEILYNCYTNVLLGTEERRKILKVGKCFDCSCPRCQDPTELGTHMSSFICSQ 288
            .:.| .::...:..|...:.|.:.|:..:.||..||....|.|.|..|.| .:....|.::.|. 
 Worm   193 AMLVPVSSELPSTLEGACHSYIDELMPRDMRRDTLKKKYKFLCQCDGCLD-EDRNARMEAWTCG- 255

  Fly   289 CSCVDGYIVRQPDTGIWQCLLNPEHTLKQEFVSNMLERAKEEIFHARDDIYRQELLLAKLSRLLH 353
             .||.|: :|..:.|  ||.|......|..|  .:...|:|....||             |||  
 Worm   256 -ICVKGW-MRNKENG--QCELCGWTMSKDHF--ELCRTAEEAGIAAR-------------SRL-- 299

  Fly   354 RNHFLMLDLKQNIASILRQILQNMGTRPNKKVYERKIRLC--------QEILLVLKVVTPGISRL 410
            .|..:.|:.|:|:...|..:.|:  |..:..|:...:..|        |.|....|.   |.:.|
 Worm   300 ANDAIPLETKRNLCEKLLDLFQD--TLHDHNVHRIPVLRCLYICSLAAQNITAAAKT---GGTLL 359

  Fly   411 KAIALYELANTQAELARKMYTEM-------EHSANDLLAELERVEVMLRESLRMLLFEPLATPEG 468
            ..:.:|:.....|.|.:|.....       :..|..||.|:|       |.|     |.:.||:.
 Worm   360 SIMLVYQNTTDPAILFQKYQLAQLFCAAGAKTQATKLLQEIE-------EPL-----EKIYTPDS 412

  Fly   469 QLTRSM 474
            .:.|::
 Worm   413 MICRNV 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-6NP_611182.1 SET_SMYD <185..271 CDD:380997 18/86 (21%)
set-14NP_496323.1 zf-MYND 26..64 CDD:460312 10/37 (27%)
SET 75..241 CDD:394802 37/190 (19%)

Return to query results.
Submit another query.