DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-7 and smyd4

DIOPT Version :9

Sequence 1:NP_001261039.1 Gene:SmydA-7 / 36916 FlyBaseID:FBgn0034182 Length:488 Species:Drosophila melanogaster
Sequence 2:XP_012812690.1 Gene:smyd4 / 779741 XenbaseID:XB-GENE-945037 Length:777 Species:Xenopus tropicalis


Alignment Length:485 Identity:98/485 - (20%)
Similarity:157/485 - (32%) Gaps:181/485 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 DEKLGRHLVASIAIEPGDTILEERPL--LVAPH---------WE---------CH--------QL 49
            |.:.||||:||..||.|:.::.|...  ::.|.         |:         ||        .|
 Frog   246 DTRKGRHLLASQNIEQGEVLIWEEAFASVIIPERKQWRKEIKWDTRITACDHYCHYCLNRVIASL 310

  Fly    50 KC------AQCLQE-------SY------------------------VICRRCQVF--------- 68
            .|      ..|.||       ||                        |:...|::|         
 Frog   311 PCQYCSFARYCSQECMDKAWRSYHYIECSMGDLLLALGMFCHTALRAVLVAGCRLFSQSLEQTGS 375

  Fly    69 -------PLCMDCNQHDEFECEFFTS------------GAGKALCKDILVKNFGICGLLKLLLLL 114
                   .:|...|.:.|..|..:.|            ...|.||      ......|.|.|.|:
 Frog   376 ADATDKTKVCNSKNTYHEKYCSSYQSVVNLLPHTENHPAERKFLC------GLTAAALYKKLCLI 434

  Fly   115 ENPRTKGDCQMLIDVPINLSDYRDGEGMWQEHEELVVRPLMESG-LADVLPTQELTSDALHAHCI 178
                      |..|:..:.|         |..:.|.    .||| :.|....::.....:..|.:
 Frog   435 ----------MAKDLVSSTS---------QTEKSLT----KESGTIEDWSSVRQFLGPTVLRHML 476

  Fly   179 RIDSNSFEVTA----KDGDTL------KGIFVWGATLP------HHCVPNTVVALDEQFNMKLYA 227
            ::..|:..|||    :|..:|      |.|.:..|..|      |.|.|||.|:...:| :.:.|
 Frog   477 QLYCNAQAVTALQENEDESSLSLVKSNKSIRLATAVFPVLSLLNHSCDPNTTVSFTGRF-VTVRA 540

  Fly   228 AVPLQPGDIIYNSYTNP---LMGTSQRQHQLRLSRRLECICSRCLDPTEMGTHMSSLKCKECPGF 289
            ..|::..:.:.:.| .|   .|..::||..|:......|.|..|.:         .||.|:..||
 Frog   541 NRPIRRDEEVTHCY-GPHKLRMDVAERQQLLKDQYFFVCQCKACTE---------ELKGKKTHGF 595

  Fly   290 --SVCEIDSNGKLGDWRCPDCRALLTAAEV----------HELQAA--------VGSALVDAMGD 334
              .:|:....|:...: |...|...||::.          :.:|.|        ..:|.:..|..
 Frog   596 FCPLCKAQLEGEEALY-CTGARCTYTASQTQLTSRLNQLGNHIQIAKVQLQDNKTDNAKMTLMSC 659

  Fly   335 LQVYEALLTQYGPLLHPNHFMLLDIKQNIA 364
            |...|..|:|       :|.:|.:|..::|
 Frog   660 LSEAECFLSQ-------DHLLLGEIMDHLA 682

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-7NP_001261039.1 None
smyd4XP_012812690.1 TPR repeat 106..134 CDD:276809
TPR_11 107..170 CDD:290150
TPR repeat 143..173 CDD:276809
zf-MYND 299..338 CDD:280009 9/38 (24%)
SET <509..555 CDD:279228 12/47 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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