DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-7 and CG18213

DIOPT Version :9

Sequence 1:NP_001261039.1 Gene:SmydA-7 / 36916 FlyBaseID:FBgn0034182 Length:488 Species:Drosophila melanogaster
Sequence 2:NP_650589.2 Gene:CG18213 / 42055 FlyBaseID:FBgn0038470 Length:879 Species:Drosophila melanogaster


Alignment Length:127 Identity:35/127 - (27%)
Similarity:52/127 - (40%) Gaps:31/127 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 EKLGRHLVASIAIEPGDTILEERPL---LVAPHWEC-----HQLK---CAQCLQESYVICRRCQV 67
            ||.| .:.||..:..|:.:|.|.|:   ..||...|     ||.:   |..|...||  |.:.  
  Fly   237 EKSG-GVFASCDVPKGEIVLVENPVYFQFSAPFLNCELCGVHQQQLYTCDNCRYRSY--CSKS-- 296

  Fly    68 FPLCM--DCNQHDEFECEFFTSGAGKALCKDILVKNFGICG--LLKLLL-------LLENPR 118
               ||  |...| ::||..:..|....|..::|.:.|...|  :|..::       :|.|||
  Fly   297 ---CMKSDAEVH-QYECYGYKIGLIPMLEANMLFRLFCEAGEYILPAIVDYAMDGGILSNPR 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-7NP_001261039.1 None
CG18213NP_650589.2 zf-MYND 271..309 CDD:280009 12/45 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452057
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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