DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-7 and Smyd4-3

DIOPT Version :9

Sequence 1:NP_001261039.1 Gene:SmydA-7 / 36916 FlyBaseID:FBgn0034182 Length:488 Species:Drosophila melanogaster
Sequence 2:NP_725048.1 Gene:Smyd4-3 / 36234 FlyBaseID:FBgn0033633 Length:660 Species:Drosophila melanogaster


Alignment Length:302 Identity:72/302 - (23%)
Similarity:115/302 - (38%) Gaps:60/302 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 GRHLVASIAIEPGDTILEERPLLVAPHWECHQLKCAQCLQESY--VICRRCQVFPLCMD-CNQ-- 76
            ||...||..::||:.:|.|||.:.....:..:..|..|...:.  |.|.||.....|.: |.:  
  Fly   250 GRFARASADVKPGEELLVERPFVSVLLEKFAKTHCENCFMRTVVPVACPRCADVLYCSEQCREEA 314

  Fly    77 ---HDEFECE----FFTSGAGKALCKDI---LVKNFGICGLLKLLLLLENPRTKGDCQMLIDVPI 131
               :.::||.    .:.|||  ::...|   ::.:..:...|||...::...|.   :.||.:| 
  Fly   315 SKKYHKYECGIVPIIWRSGA--SINNHIALRIIASKPLDYFLKLKPTIDEELTP---EQLISLP- 373

  Fly   132 NLSDYR--------DGEGMWQEHEELVVRPLMESGLADVLPT-----QELTSDALHAHC---IR- 179
             ..|:|        .||   ::........||...|.:.|..     .|...|.:...|   :| 
  Fly   374 -KDDFRRVAQLERHQGE---RQPSNFFQHVLMARFLTNCLRAGGYFGSEPKPDEVSIICSLVLRS 434

  Fly   180 ---IDSNSFEVTA----KDGDTLKGIFVWGATLP------HHCVPNTVVALDEQFNMKLYAAVPL 231
               |..|:.||..    ......|.||:.||..|      |.|.|. ||.......:.:.:..|:
  Fly   435 LQFIQFNTHEVAELHKFSSSGREKSIFIGGAIYPTLALFNHSCDPG-VVRYFRGTTIHINSVRPI 498

  Fly   232 QPGDIIYNSYTNPLM---GTSQRQHQLRLSRRLECICSRCLD 270
            :.|..|..:| .|:.   ..|:||.:|:.....||.|..|:|
  Fly   499 EAGLPINENY-GPMYTQDERSERQARLKDLYWFECSCDACID 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-7NP_001261039.1 None
Smyd4-3NP_725048.1 TPR_11 74..143 CDD:290150
TPR repeat 74..103 CDD:276809
TPR repeat 108..142 CDD:276809
TPR repeat 150..177 CDD:276809
zf-MYND 284..323 CDD:280009 8/38 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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