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Protein Alignment SmydA-7 and Smyd2

DIOPT Version :9

Sequence 1:	NP_001261039.1	Gene:	SmydA-7 / 36916	FlyBaseID:	FBgn0034182	Length:	488	Species:	Drosophila melanogaster
Sequence 2:	NP_996733.1	Gene:	Smyd2 / 289372	RGDID:	727785	Length:	433	Species:	Rattus norvegicus

Alignment Length:	448	Identity:	88/448 - (19%)
Similarity:	146/448 - (32%)	Gaps:	134/448 - (29%)

- Green bases have known domain annotations that are detailed below.

  Fly    17 GRHLVASIAIEPGDTILEERPLLVAPHWEC--------HQLKCAQCLQESYVICRRC-QVFPLCM 72
            ||.|.|......||.      |...|.:.|        |..:|....:|....|.|| |.|...:
  Rat    18 GRGLRALRPFHVGDL------LFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDV 76

  Fly    73 DCNQHD----EFEC-------EFFTSGAGKALCKDILVKNFGICGLLKLLLLLENPRTKGDCQML 126
            :|.:.|    :.||       |.:.......|...||.|.           .:...||..:..:.
  Rat    77 ECQKEDWPLHKLECSSMVVFGENWNPSETVRLTARILAKQ-----------KMHPERTPSEKLLA 130

  Fly   127 IDVPINLSDYRDGEGMWQEHEELVVRPLMESGLADVLPTQELTSDAL----HAHCI----RIDSN 183
            :....:..|..|.|          .:.|::|   |:....:..|..|    |:..:    :::.|
  Rat   131 VREFESHLDKLDNE----------KKDLIQS---DIAALHQFYSKHLEFPDHSSLVVLFAQVNCN 182

  Fly   184 SFEVTAKDGDTL-KGIFVWGATLPHHCVPNTVVALDEQFNMKLYAAVPLQPGDIIYNSYTNPLMG 247
            .|.:..::...| ..||...|.:.|.|.||.:|...... .::.|...:.|||.::.||.:.|..
  Rat   183 GFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTL-AEVRAVQEIHPGDEVFTSYIDLLYP 246

  Fly   248 TSQRQHQLRLSRRLECICSRCLDPTEMGTHMSSLKCKECPG------------------------ 288
            |..|..:||.|....|.|..|....:....:...|....|.
  Rat   247 TEDRNDRLRDSYFFTCECRECTTKDKDKAKVEIRKLSNPPQAEAIRDMVRYARNVIEEFRRAKHY 311

  Fly   289 ------FSVCEI----------DSNGKLGDWRCPDCRALLTAAEVHELQAAVGSALVDAMGDLQV 337
                  ..:||:          |||..:                :|.:..|:|..|.     :|.
  Rat   312 KSPSELLEICELSQEKMSSVFEDSNVYM----------------LHMMYQAMGVCLY-----MQD 355

  Fly   338 YEALLTQYGPLL---HPNHFMLLDIKQNIASI-LRAAALMNSM------DQPCKKLLA 385
            :|..| :||..:   :..|:.:..:  |:||: |:...|...:      ::..||.:|
  Rat   356 WEGAL-KYGQKIIKPYSKHYPVYSL--NVASMWLKLGRLYMGLENKAAGEKALKKAIA 410

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.