DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmydA-7 and erlin2

DIOPT Version :10

Sequence 1:NP_611181.1 Gene:SmydA-7 / 36916 FlyBaseID:FBgn0034182 Length:488 Species:Drosophila melanogaster
Sequence 2:NP_001121887.1 Gene:erlin2 / 100151163 ZFINID:ZDB-GENE-090505-4 Length:331 Species:Danio rerio


Alignment Length:242 Identity:46/242 - (19%)
Similarity:80/242 - (33%) Gaps:77/242 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   312 LTAAEVHELQAAVGSALVDAM------GDLQVY---EALLT-QYGPLLHPNHFMLLDIKQNIASI 366
            :|...|..|..|:|.|.|.:.      |.:.||   .|||| ..||..|    ::|.......|:
Zfish     1 MTLGAVASLILAIGGAAVFSALHKIEEGHVGVYYRGGALLTATSGPGFH----LMLPFITTFKSV 61

  Fly   367 LRAAALMNSMDQPC-----KKLLARRVELCSDLLPVCRAVVPGISKLYA---------------- 410
            ..........:.||     ..:...|:|:.:.|:|   :.|.||.:.:.                
Zfish    62 QTTLQTDEVKNVPCGTGGGVMIYFDRIEVVNYLVP---SAVYGIVRNFTADYDKALIFNKVHHEL 123

  Fly   411 -------------IGLFE--------------------YLLALVELVELQFAESDLSKKEYVAHL 442
                         ||||:                    .::..|.:.:....||.....|.:...
Zfish   124 NQFCSVHTLQDVYIGLFDQIDENLKLTLQEDLTSMAPGLIIQAVRVTKPNIPESIRRNYELMESE 188

  Fly   443 RTASLVATEAMDLLRFEPENSAEGYLADRISMELERIESDLK-KYGR 488
            ||..|:|.:...::..|.|...:     :..:|.|::....: |:|:
Zfish   189 RTKLLIAAQTQKVVEKEAETERK-----KAVIEAEKVAQVAEIKFGQ 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-7NP_611181.1 SET_SMYD <178..268 CDD:380997
erlin2NP_001121887.1 SPFH_like_u3 19..306 CDD:259804 39/224 (17%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.