DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6805 and Synj2

DIOPT Version :10

Sequence 1:NP_611178.1 Gene:CG6805 / 36911 FlyBaseID:FBgn0034179 Length:357 Species:Drosophila melanogaster
Sequence 2:NP_001106842.1 Gene:Synj2 / 84018 RGDID:69436 Length:1496 Species:Rattus norvegicus


Alignment Length:373 Identity:114/373 - (30%)
Similarity:173/373 - (46%) Gaps:58/373 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 TWNV-----------GTHTPRNQDLSSLLSLNGTTTCPDNQLP-DIYVIGFQEV----------- 57
            ||||           || |.....|.....|:|.....|:..| ||:.:||:|:           
  Rat   553 TWNVNGGKQFRSNLLGT-TELTDWLLDAPQLSGAVDSQDDGGPADIFAVGFEEMVELSAGNIVNA 616

  Fly    58 STTPQVLKIFNDDPWVLKIADSLS-DHQFVKVDSKQLQGILITMFAQHKHIPHMKEIETEATRTG 121
            |||       |...|..::..::| .|:::.:.|.||.|:.:.:|.:..|:|.::::..:..:||
  Rat   617 STT-------NRKMWGEQLQKAISRSHRYILLTSAQLVGVCLYIFVRPYHVPFIRDVAIDTVKTG 674

  Fly   122 LGGLWGNKGAVSIRLSLYGTGVAFVCSHLAAHDEKLKERIEDYHQIVDNHKYNAQGYRRIFDHDF 186
            :||..||||||.||...:.|...|:||||.|...::|||.|||.:|  .||.:....|.||.||:
  Rat   675 MGGKAGNKGAVGIRFQFHSTSFCFICSHLTAGQSQVKERNEDYREI--THKLSFPSGRNIFSHDY 737

  Fly   187 VFWFGDLNFRLSGDMSAWDVRTDVENQRYADLLKLDQLNLLREKGNAFSLLEEQQPNFAPTFKFV 251
            |||.||.|:|:  |::..:|...|:.|.:..|::.|||.|.:..|..|....|...||.||:|:.
  Rat   738 VFWCGDFNYRI--DLTYEEVFYFVKRQDWKKLMEFDQLQLQKSSGKIFKDFHEGTINFGPTYKYD 800

  Fly   252 EGTNDYNLK---RRPAWCDRILHRVQSNIYPGI-------------------TLSANQLSYQSHM 294
            .|:..|:..   |.|||.||:|...:.:.|...                   |.|...|.|....
  Rat   801 VGSAAYDTSDKCRTPAWTDRVLWWRKKHPYDKTAGELNLLDSDLDGDANIRHTWSPGTLKYYGRA 865

  Fly   295 DYTLSDHKPVSATFNYKVEAANQTYTDEELHEMTHGSASSPATPNVSL 342
            :...|||:||.|....:|:..:....:....|::.......||..|:|
  Rat   866 ELQASDHRPVLAIVEVEVQEVDVGARERVFQEVSSVQGPLDATVIVNL 913

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6805NP_611178.1 EEP 12..308 CDD:469791 108/337 (32%)
Synj2NP_001106842.1 COG5329 28..485 CDD:227637
EEP 547..878 CDD:469791 107/336 (32%)
DUF1866 889..1025 CDD:286093 5/25 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1047..1083
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1100..1149
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1205..1357
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1393..1413
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1442..1461
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1468..1496
Blue background indicates that the domain is not in the aligned region.

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