DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cbp53E and APC1

DIOPT Version :9

Sequence 1:NP_001286511.1 Gene:Cbp53E / 36905 FlyBaseID:FBgn0004580 Length:310 Species:Drosophila melanogaster
Sequence 2:NP_568940.1 Gene:APC1 / 836303 AraportID:AT5G61810 Length:478 Species:Arabidopsis thaliana


Alignment Length:185 Identity:41/185 - (22%)
Similarity:74/185 - (40%) Gaps:46/185 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 MEAYDDNQD-GKIDIRELAQLLPME---ENFLLLFRFDNPLESSVEFMKIWREYDTDNSGYIEAD 154
            |||....|: ||         .|:|   |:.|:..| :...:..:...|::..:|....|:::..
plant     1 MEAEKSKQNPGK---------KPVEATMEHVLVALR-ETKEKREIRIQKLFEFFDNSKLGFLDDT 55

  Fly   155 ELKNFLRDLLKEAKKINDVSEDKLIEYTDTMLQVFDANKDGRLQLSEMAKLLPVKENFLCRQVF- 218
            :::          |.::.:|......|....|:|.|:|:|||:...|..:.:..||..|.: :| 
plant    56 QIE----------KGLSSLSIPPKYRYASDFLKVCDSNRDGRVDYQEFRRYMDAKELELYK-IFQ 109

  Fly   219 --------------------KGATKLTKEDIEKVFSLYDRDNSGTIENEELKGFL 253
                                |...|:..|::.......|:||:|.|..||.:.||
plant   110 AIDIEHNGDICPAELWEALDKAGIKIKDEELASFMEHVDKDNNGIITFEEWRDFL 164

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cbp53ENP_001286511.1 EFh_HEF_CBN 40..301 CDD:320079 41/185 (22%)
EF-hand motif 40..68 CDD:320079
EF-hand motif 89..118 CDD:320079 8/27 (30%)
EF-hand motif 135..164 CDD:320079 3/28 (11%)
EF-hand motif 181..210 CDD:320079 9/28 (32%)
EF-hand motif 228..257 CDD:320079 9/26 (35%)
EF-hand motif 273..301 CDD:320079
APC1NP_568940.1 FRQ1 32..168 CDD:227455 30/144 (21%)
PTZ00169 209..475 CDD:240302
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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