DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Cbp53E and Pvalb

DIOPT Version :9

Sequence 1:	NP_001286511.1	Gene:	Cbp53E / 36905	FlyBaseID:	FBgn0004580	Length:	310	Species:	Drosophila melanogaster
Sequence 2:	XP_038934382.1	Gene:	Pvalb / 25269	RGDID:	3457	Length:	113	Species:	Rattus norvegicus

Alignment Length:	83	Identity:	30/83 - (36%)
Similarity:	46/83 - (55%)	Gaps:	10/83 - (12%)

- Green bases have known domain annotations that are detailed below.

  Fly   210 ENFLCRQVFK--GATKLTKEDIEKVFSLYDRDNSGTIENEELKGFLKDLLELVKKDDYDAQDLAA 272
            ::|..::.|:  |..|.:.:|::|||.:.|:|.||.||.:||...||..       ..||:||:|
  Rat    23 DSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGF-------SSDARDLSA 80

  Fly   273 FE-ETIMRGVGTDKHGKI 289
            .| :|:|.....|..|||
  Rat    81 KETKTLMAAGDKDGDGKI 98

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Cbp53E	NP_001286511.1	EFh_HEF_CBN	40..301	CDD:320079	30/83 (36%)
		EF-hand motif	40..68	CDD:320079
		EF-hand motif	89..118	CDD:320079
		EF-hand motif	135..164	CDD:320079
		EF-hand motif	181..210	CDD:320079	30/83 (36%)
		EF-hand motif	228..257	CDD:320079	14/28 (50%)
		EF-hand motif	273..301	CDD:320079	7/18 (39%)
Pvalb	XP_038934382.1	EFh_parvalbumin_like	9..101	CDD:330177	30/83 (36%)
		EF-hand motif	9..38	CDD:319994	3/14 (21%)
		EF-hand motif	43..72	CDD:319994	14/35 (40%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910