DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vha16-4 and atp5mc1

DIOPT Version :9

Sequence 1:NP_611169.1 Gene:Vha16-4 / 36900 FlyBaseID:FBgn0262513 Length:155 Species:Drosophila melanogaster
Sequence 2:NP_998193.1 Gene:atp5mc1 / 406301 ZFINID:ZDB-GENE-040426-1966 Length:138 Species:Danio rerio


Alignment Length:142 Identity:40/142 - (28%)
Similarity:64/142 - (45%) Gaps:16/142 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 CAIVFSTLGAAYGTAKASVGISSMSIKHPQLIMK--AIVPVVMAGIIAI-YGLVIAVLLAGSLSS 82
            ||...|:.....|.::|.....|:....|:...:  |::||..|.::.: .|...:|     .|.
Zfish     4 CAKFVSSPAVIRGGSRALARPISVVFSRPEARSEQAALLPVSEAALLNLTRGFQTSV-----ASR 63

  Fly    83 PYSAYKGFLNLSAGLAVGVSGMGAGIAIGVVGEAGVRASAQQP----KLFVAIILILIFAEVLGL 143
            .......|:...|. .|||:|.|||  ||.|..:.:...|:.|    :||...||....:|.:||
Zfish    64 DIDTAAKFIGAGAA-TVGVAGSGAG--IGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGL 125

  Fly   144 YGLIVA-IYLFS 154
            :.|:|| :.||:
Zfish   126 FCLMVAFLILFA 137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vha16-4NP_611169.1 ATP-synt_C 13..118 CDD:294318 26/99 (26%)
ATP-synt_C 93..152 CDD:278563 23/63 (37%)
atp5mc1NP_998193.1 ATP9 64..138 CDD:164765 26/77 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0636
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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