DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vha16-4 and vha-2

DIOPT Version :10

Sequence 1:NP_611169.1 Gene:Vha16-4 / 36900 FlyBaseID:FBgn0262513 Length:155 Species:Drosophila melanogaster
Sequence 2:NP_499166.1 Gene:vha-2 / 187779 WormBaseID:WBGene00006911 Length:161 Species:Caenorhabditis elegans


Alignment Length:78 Identity:20/78 - (25%)
Similarity:30/78 - (38%) Gaps:17/78 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   451 KMTGSNMPTTDLTGSDNSNSPV----------STPAKKVKTEITPSLPPTFAGIVNAT--SKD-D 502
            ::|..:.|.|    ||:|:|..          :...|::....|..|......|:..|  |.| |
 Worm    15 RLTPKDEPET----SDSSSSAAKLYRNIVGDENVTRKRISVVDTSHLGDNHEFIIETTCGSNDMD 75

  Fly   503 YGITEEAVRRYLM 515
            .|.....||.:||
 Worm    76 EGFYWIIVRNHLM 88

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vha16-4NP_611169.1 PRK13469 13..118 CDD:469780
ATP-synt_Vo_c_ATP6C_rpt2 87..153 CDD:349416
vha-2NP_499166.1 V_ATP_synt_C 16..124 CDD:130170 20/77 (26%)
ATP-synt_Vo_c_ATP6C_rpt2 92..158 CDD:349416
Blue background indicates that the domain is not in the aligned region.

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