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Protein Alignment inaC and Prkci

DIOPT Version :9

Sequence 1:	NP_476863.1	Gene:	inaC / 36897	FlyBaseID:	FBgn0004784	Length:	700	Species:	Drosophila melanogaster
Sequence 2:	NP_114448.1	Gene:	Prkci / 84006	RGDID:	620961	Length:	596	Species:	Rattus norvegicus

Alignment Length:	689	Identity:	219/689 - (31%)
Similarity:	307/689 - (44%)	Gaps:	218/689 - (31%)

- Green bases have known domain annotations that are detailed below.

  Fly    16 PSVPSAAPGAKAPAAGAGKGPGNLLEITGEANIVNYMKNRLRKGAMKRKGLEMVNGHRFGVRFFK 80
            |.||. .||...|               ||.      |:..|:||.:.:.|...|||.|..:.|.
  Rat   107 PCVPE-RPGMPCP---------------GED------KSIYRRGARRWRKLYCANGHTFQAKRFN 149

  Fly    81 NPTYCGHCKDFIWGFGKQGFQCEECRFNIHQKCCKFVVFKCPGKDTDFDADCAKVKHGWISTTYT 145
            ...:|..|.|.|||.|:||::|..|:..:|:||.|.|..
  Rat   150 RRAHCAICTDRIWGLGRQGYKCINCKLLVHKKCHKLVTI-------------------------- 188

  Fly   146 TPTFCDECGLLLHGVAHQGVKCENCNLNVHHACQETVPPMCGADISEVRGKLLLYVELKGNNLKV 210
                  |||                        :.::||
  Rat   189 ------ECG------------------------RHSLPP-------------------------- 197

  Fly   211 DIKEAANLIPMDTNGFSDPYIAVQMHPDRSGRTKKKTKTIQKNLNPVFNETFTFELQPQDRDKRL 275
                 ..::|||.:         .||||.       |:|:.. .||..:|:
  Rat   198 -----EPMMPMDQS---------SMHPDH-------TQTVIP-YNPSSHES-------------- 226

  Fly   276 LIEVWDWDRTSRNDFMGSFSFSLEELQKEPVDGWYKFLSQVEGEHYNIPCVDAFNDIARLRDEVR 340
                                                 |.|| ||
  Rat   227 -------------------------------------LDQV-GE--------------------- 232

  Fly   341 HDRRPNEKRRMDNKDMPHNMSKRDMIRAADFNFVKVIGKGSFGKVLLAERRGTDELYAVKVLRKD 405
                  ||..|:.::.....|.   :...||:.::|||:||:.||||...:.||.:||:||::|:
  Rat   233 ------EKEAMNTRESGKASSS---LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKE 288

  Fly   406 VIIQTDDMELPMNEKKILALSGRPPFLVSMHSCFQTMDRLFFVMEYCKGGDLMYHMQQYGRFKES 470
            ::...:|::....||.:...:...||||.:||||||..|||||:||..|||||:|||:..:..|.
  Rat   289 LVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEE 353

  Fly   471 VAIFYAVEVAIALFFLHERDIIYRDLKLDNILLDGEGHVKLVDFGLSKEGVTERQTTRTFCGTPN 535
            .|.||:.|:::||.:||||.||||||||||:|||.|||:||.|:|:.|||:....||.|||||||
  Rat   354 HARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPN 418

  Fly   536 YMAPEIVSYDPYSIAADWWSFGVLLFEFMAGQAPF------EGDDETT---VFRNIKDKKAVFPK 591
            |:||||:..:.|..:.|||:.|||:||.|||::||      :..|:.|   :|:.|.:|:...|:
  Rat   419 YIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPR 483

  Fly   592 HFSVEAMDIITSFLTKKPNNRLGA-GRYARQEITTHPFFRNVDWDKAEACEMEPPIKPMIKHRKD 655
            ..||:|..::.|||.|.|..|||. .:....:|..||||||||||..|..::.||.||.|.....
  Rat   484 SLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISGEFG 548

  Fly   656 ISNFDDAFTKEKTDLTPTDKLFMMNLDQNDFIGFSFMNP 694
            :.|||..||.|...|||.|...:..:||::|.||.::||
  Rat   549 LDNFDSQFTNEPVQLTPDDDDIVRKIDQSEFEGFEYINP 587

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.