DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment inaC and RSH3

DIOPT Version :9

Sequence 1:NP_476863.1 Gene:inaC / 36897 FlyBaseID:FBgn0004784 Length:700 Species:Drosophila melanogaster
Sequence 2:NP_173094.4 Gene:RSH3 / 838214 AraportID:AT1G16440 Length:499 Species:Arabidopsis thaliana


Alignment Length:437 Identity:125/437 - (28%)
Similarity:192/437 - (43%) Gaps:105/437 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   346 NEKRRMDNKDMPHN------------MSKRDMIRAADFNFVKVIGKGSFGKVLLAERRGTD--EL 396
            :|....:|...||.            .|:...:..:||..:|.:|.|..|.|.|.|.:|.:  ..
plant    76 SESTSTNNSSKPHTGGDIRWDAVNSLKSRGIKLGISDFRVLKRLGYGDIGSVYLVELKGANPTTY 140

  Fly   397 YAVKVLRKDVIIQTDDMELPMNEKKILALSGRPPFLVSMHSCFQTMDRLF-FVMEYCKGGDLMYH 460
            :|:||:.|..::..:.:.....|::||:.... |||.:::|.|:| |:.: .|||:|.||:| |.
plant   141 FAMKVMDKASLVSRNKLLRAQTEREILSQLDH-PFLPTLYSHFET-DKFYCLVMEFCSGGNL-YS 202

  Fly   461 MQQYGR---FKESVAIFYAVEVAIALFFLHERDIIYRDLKLDNILLDGEGHVKLVDFGLSKE--- 519
            ::|...   |.|..|.|:|.||.:||.:||...|:|||||.:|:|:..:||:.|.||.||..   
plant   203 LRQKQPNKCFTEDAARFFASEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCSV 267

  Fly   520 -----------GVT----------------------------ERQT------------------- 526
                       |.|                            .|::                   
plant   268 NPTLVKSFNGGGTTGIIDDNAAVQGCYQPSAFFPRMLQSSKKNRKSKSDFDGSLPELMAEPTNVK 332

  Fly   527 TRTFCGTPNYMAPEIVSYDPYSIAADWWSFGVLLFEFMAGQAPFEGDDETTVFRNIKDKKAVFPK 591
            :.:|.||..|:||||:..:.:..|.|||:||:.::|.:.|..||:|........|:..:...||:
plant   333 SMSFVGTHEYLAPEIIKNEGHGSAVDWWTFGIFIYELLHGATPFKGQGNKATLYNVIGQPLRFPE 397

  Fly   592 HFSVE--AMDIITSFLTKKPNNRLGAGRYARQEITTHPFFRNVDWD--KAEACEMEPPIKPMIKH 652
            :..|.  |.|:|...|.|:|.||:...|.| .||..||||..|:|.  :.|.    ||      |
plant   398 YSQVSSTAKDLIKGLLVKEPQNRIAYKRGA-TEIKQHPFFEGVNWALIRGET----PP------H 451

  Fly   653 RKDISNFDDAFTKEKTDLTP--TDKLFMMNLDQN------DFIGFSF 691
            ..:..:|.....|||..|.|  |:|...|..:.|      |:|.|.:
plant   452 LPEPVDFSCYVKKEKESLPPAATEKKSKMFDEANKSGSDPDYIVFEY 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
inaCNP_476863.1 C1_1 72..124 CDD:278556
C1_1 137..189 CDD:278556
C2_PKC_alpha_gamma 194..324 CDD:175992
S_TKc 371..629 CDD:214567 98/326 (30%)
STKc_PKC 375..692 CDD:270722 118/396 (30%)
RSH3NP_173094.4 STKc_phototropin_like 111..457 CDD:270726 107/359 (30%)
S_TKc 113..436 CDD:214567 98/326 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 206 1.000 Inparanoid score I1276
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.050

Return to query results.
Submit another query.