DRSC/TRiP Functional Genomics Resources

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Protein Alignment inaC and Prkcz

DIOPT Version :9

Sequence 1:NP_476863.1 Gene:inaC / 36897 FlyBaseID:FBgn0004784 Length:700 Species:Drosophila melanogaster
Sequence 2:XP_038965237.1 Gene:Prkcz / 25522 RGDID:3399 Length:605 Species:Rattus norvegicus


Alignment Length:694 Identity:210/694 - (30%)
Similarity:302/694 - (43%) Gaps:209/694 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 PSVPSAAPGAKAPAAGAGKGPGNLLEITGEANIVNYMKNRLRKGAMKRKGLEMVNGHRFGVRFFK 80
            ||:|. .||...|               ||.      |:..|:||.:.:.|...|||.|..:.|.
  Rat    97 PSIPE-QPGMPCP---------------GED------KSIYRRGARRWRKLYRANGHLFQAKRFN 139

  Fly    81 NPTYCGHCKDFIWGFGKQGFQCEECRFNIHQKCCKFVVFKCPGKDTDFDADCAKVKHGWISTTYT 145
            ...|||.|.:.|||..:||:                                             
  Rat   140 RRAYCGQCSERIWGLARQGY--------------------------------------------- 159

  Fly   146 TPTFCDECGLLLHGVAHQGVKCENCNLNVHHACQETVPPMCGADISEVRGKLLLYVELKGNNLKV 210
                                :|.||.|.||..|...||..|...:..|         :......|
  Rat   160 --------------------RCINCKLLVHKRCHVLVPLTCRRHMDSV---------MPSQEPPV 195

  Fly   211 DIK-EAANLIPMDTNGFSDPYIAVQMHPDRSGRTKKKTKTIQKNLNPVFNETFTFELQPQDRDKR 274
            |.| :..:|...:|:|       :.:|.                                     
  Rat   196 DDKNDGVDLPSEETDG-------IALHS------------------------------------- 216

  Fly   275 LLIEVWDWDRTSRNDFMGSFSFSLEELQKEPVDGWYKFLSQVEGEHYNIPCVDAFNDIARLRDEV 339
                  .|..|:|                 ||                     |:...:|..|.:
  Rat   217 ------TWCATAR-----------------PV---------------------AYISSSRKHDNI 237

  Fly   340 RHDRRPNEKRRMDNKDMPHNMSKRDMIRAA------DFNFVKVIGKGSFGKVLLAERRGTDELYA 398
            :.          |::|:...:...|.|:.:      ||:.::|||:||:.||||...:..|::||
  Rat   238 KD----------DSEDLKPVIDGVDGIKISQGLGLQDFDLIRVIGRGSYAKVLLVRLKKNDQIYA 292

  Fly   399 VKVLRKDVIIQTDDMELPMNEKKILALSGRPPFLVSMHSCFQTMDRLFFVMEYCKGGDLMYHMQQ 463
            :||::|:::...:|::....||.:...:...||||.:||||||..|||.|:||..|||||:|||:
  Rat   293 MKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNGGDLMFHMQR 357

  Fly   464 YGRFKESVAIFYAVEVAIALFFLHERDIIYRDLKLDNILLDGEGHVKLVDFGLSKEGVTERQTTR 528
            ..:..|..|.|||.|:.|||.|||||.||||||||||:|||.:||:||.|:|:.|||:....||.
  Rat   358 QRKLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTS 422

  Fly   529 TFCGTPNYMAPEIVSYDPYSIAADWWSFGVLLFEFMAGQAPF-------EGDDETTVFRNIKDKK 586
            ||||||||:||||:..:.|..:.|||:.|||:||.|||::||       :.:.|..:|:.|.:|.
  Rat   423 TFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKP 487

  Fly   587 AVFPKHFSVEAMDIITSFLTKKPNNRLGA-GRYARQEITTHPFFRNVDWDKAEACEMEPPIKPMI 650
            ...|:..||:|..::..||.|.|..|||. .:....:|.:|.|||::|||..|..:..||.:|.|
  Rat   488 IRIPRFLSVKASHVLKGFLNKDPKERLGCRPQTGFSDIKSHAFFRSIDWDLLEKKQTLPPFQPQI 552

  Fly   651 KHRKDISNFDDAFTKEKTDLTPTDKLFMMNLDQNDFIGFSFMNP 694
            .....:.|||..||.|...|||.|:..:..:||::|.||.::||
  Rat   553 TDDYGLDNFDTQFTSEPVQLTPDDEDVIKRIDQSEFEGFEYINP 596

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
inaCNP_476863.1 C1_1 72..124 CDD:278556 12/51 (24%)
C1_1 137..189 CDD:278556 10/51 (20%)
C2_PKC_alpha_gamma 194..324 CDD:175992 12/130 (9%)
S_TKc 371..629 CDD:214567 124/265 (47%)
STKc_PKC 375..692 CDD:270722 149/324 (46%)