DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Psi and pcbp3

DIOPT Version :10

Sequence 1:NP_995862.1 Gene:Psi / 36889 FlyBaseID:FBgn0014870 Length:797 Species:Drosophila melanogaster
Sequence 2:XP_021334345.1 Gene:pcbp3 / 553765 ZFINID:ZDB-GENE-050522-157 Length:358 Species:Danio rerio


Alignment Length:408 Identity:85/408 - (20%)
Similarity:151/408 - (37%) Gaps:95/408 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 ARLAASAGTSCEEQIRL--PESVAGAFMGRSSNDTITHIQAESGVKVQVMQDQ--DRVIMLRGQR 172
            :::.:..|.:....|||  .....|:.:|: ..:|:..::.|||.::.:.:..  :|::.:.|..
Zfish     4 SKVQSEGGLNVTLTIRLLMHGKEVGSIIGK-KGETVKKMREESGARINISEGNCPERIVTITGPT 67

  Fly   173 DTVTKG---------REMIQNMANRAGGGQVEVLLTINMPPPGPSGYPPYQEIMIPGAKVGLVIG 228
            |.:.|.         .::|.:|:|                .|..|..|....:::|.::.|.:||
Zfish    68 DAIFKAFAMIAYKFEEDIINSMSN----------------SPATSKPPVTLRLVVPASQCGSLIG 116

  Fly   229 KGGDTIKQLQEKTGAKMIIIQDGPNQELIKPLRISGEAQKIEHAKQMVLDLIAQKDAQGQQQGGR 293
            |||..||:::|.|||::.:..|.......:.:.|||..:.|....:.:..::.:...:|      
Zfish   117 KGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTISGTPEAIIQCVKQICVVMLESPPKG------ 175

  Fly   294 GGGGGGGGPGMGFNNFNNGNGGESTEVFVPKIAVGVVIGKGG----DMIRKIQTECGCKLQF--- 351
                                   :|..:.||.|...||..||    |.:..........||.   
Zfish   176 -----------------------ATIPYRPKPASTPVIFSGGQVRADPLAASAANLSLLLQHQPL 217

  Fly   352 ----IQGKND-EMGDRRCVIQGTRQQVDDAKRTIDGLIENVMQRNGMNRNGNGGGGGPGGDSGNS 411
                |||:.. ...|..|  ....||       :..|.:..||:......|......||.|:.  
Zfish   218 PAYTIQGQYAIPHPDLYC--PSNPQQ-------LTKLHQLAMQQTPFTPLGQTTPAFPGLDAS-- 271

  Fly   412 NYGYGYGVNHAQGGREEITFLVPASKCGIVIGRGGETIKLINQQSGAHTEMDRNASNPPNEKLFK 476
                      ......|:|  :|....|.:|||.|..|..|.|.|||..:: .||....:|:...
Zfish   272 ----------PPASTHELT--IPNDLIGCIIGRQGTKINEIRQMSGAQIKI-ANAMEGSSERQIT 323

  Fly   477 SKGTTDQVEAARQMISEK 494
            ..||...:..|:.:|:.:
Zfish   324 ITGTPANISLAQYLINAR 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PsiNP_995862.1 KH_1 123..184 CDD:459630 14/73 (19%)
KH-I_FUBP_rpt2 214..280 CDD:411825 18/65 (28%)
KH-I_FUBP_rpt3 317..384 CDD:411826 18/78 (23%)
KH-I_FUBP_rpt4 428..494 CDD:411827 21/65 (32%)
DUF1897 591..619 CDD:462653
DUF1897 <653..680 CDD:462653
pcbp3XP_021334345.1 KH-I_PCBP3_rpt1 8..84 CDD:411944 14/76 (18%)
KH-I_PCBP3_rpt2 95..173 CDD:411947 20/77 (26%)
KH-I_PCBP3_rpt3 267..341 CDD:411950 23/88 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.