DRSC/TRiP Functional Genomics Resources

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Protein Alignment Psi and fubl-2

DIOPT Version :10

Sequence 1:NP_995862.1 Gene:Psi / 36889 FlyBaseID:FBgn0014870 Length:797 Species:Drosophila melanogaster
Sequence 2:NP_001023000.1 Gene:fubl-2 / 175989 WormBaseID:WBGene00022738 Length:557 Species:Caenorhabditis elegans


Alignment Length:559 Identity:175/559 - (31%)
Similarity:256/559 - (45%) Gaps:109/559 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 LPESVAGAFMGRSSNDTITHIQAESGVKVQVMQDQDRV-----IMLRGQRDTVTKGREMIQNMAN 187
            :||.|.|..:|:..:: |..||..||.:||:..|...|     ..:.|..|.|...|:||..:.|
 Worm    60 VPEKVVGLVIGKGGSE-IRLIQQTSGCRVQMDPDHQSVNGFRNCTIEGPPDQVAVARQMITQVIN 123

  Fly   188 RAGGGQVEVLLTINMPPPGPSGYPPYQEIMIPGAKVGLVIGKGGDTIKQLQEKTGAKMI-IIQD- 250
            |...|          ..||.:.....:|::||..|:||||||||:||:.:||::|.:.. ::|: 
 Worm   124 RNQTG----------AQPGAAPGEVTEEMLIPADKIGLVIGKGGETIRIVQEQSGLRNCNVVQET 178

  Fly   251 --GPNQELIKPLRISGEAQKIEHAKQMVLDLIAQKDAQG---------QQQGGRGGGGGGGGPGM 304
              ...|.  ||||:.|....||.||.:|.:::  .:.||         .|..|:.|||.|.....
 Worm   179 TTATGQP--KPLRMIGSPAAIETAKALVHNIM--NNTQGNAPLLQRAPHQPSGQFGGGYGAQEAQ 239

  Fly   305 GFNNFNNGNGGESTEVFVPKIAVGVVIGKGGDMIRKIQTECGCKLQFIQGKNDEMGDRRCVIQGT 369
            .           ..||.||:::.|::|||||:||:::..|.|.|:||....|....||..||.||
 Worm   240 A-----------KGEVIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPDTNPNSEDRIAVIMGT 293

  Fly   370 RQQVDDAKRTIDGLIENVMQRNGMNRN-GNGGGGGPGGDSGNSNYGYGYGVNHAQGGREEITFL- 432
            |.|:..|...|..::...::.||..:: |:.|...||                     :.|.:: 
 Worm   294 RDQIYRATERITEIVNRAIKNNGAPQDRGSAGTVLPG---------------------QSIFYMH 337

  Fly   433 VPASKCGIVIGRGGETIKLINQQSGAHTEMDRNASNP-PNEKLFKSKGTTDQVEAARQMISEKIN 496
            |||.|||:|||:|||.||.|.:::||...:...|... .:||:|:.||:..|:..|..::..|:.
 Worm   338 VPAGKCGLVIGKGGENIKQIERETGATCGLAPAAEQKNEDEKVFEIKGSQLQIHHASHLVRIKVG 402

  Fly   497 MELNVISRKPIGGGPGGG----------GGNSGGGQNNSHHNQQQGGYGGQNQMQGGDPNSGAGY 551
             |::..:..|...|.|||          |..:||.|:.....|||.....|:|.|...|.:|.|.
 Worm   403 -EISPNTPVPPLQGAGGGYQQQQAMFSAGTQNGGYQSTGGFIQQQQQPQFQHQQQQWAPQNGGGV 466

  Fly   552 Q------------QQPWGGPYGQQGWDPSGQQQQMAMANQGGSAAGGASGGQDYSAQWIEYYKQM 604
            |            |||......|...||:             .|...|:|..||||||..||:.:
 Worm   467 QQRLPTEMYQNPMQQPQASVIPQASADPA-------------PAVNPATGAPDYSAQWAAYYRSI 518

  Fly   605 GCHREAEMIEQQMKAKQA-----GGSSGPVQQQQPQQQQ 638
            |...:|.|:|.||:..|:     |..||..|.|||...|
 Worm   519 GLVEQAAMVESQMRRNQSNTAPLGDVSGVPQSQQPYYPQ 557

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PsiNP_995862.1 KH_1 123..184 CDD:459630 20/60 (33%)
KH-I_FUBP_rpt2 214..280 CDD:411825 29/69 (42%)
KH-I_FUBP_rpt3 317..384 CDD:411826 28/66 (42%)
KH-I_FUBP_rpt4 428..494 CDD:411827 26/67 (39%)
DUF1897 591..619 CDD:462653 14/27 (52%)
DUF1897 <653..680 CDD:462653
fubl-2NP_001023000.1 KH-I 58..122 CDD:469614 20/62 (32%)
KH-I 139..208 CDD:469614 29/70 (41%)
KH-I_FUBP_rpt3 241..308 CDD:411826 28/66 (42%)
KH-I 334..400 CDD:469614 25/65 (38%)
DUF1897 498..533 CDD:462653 16/34 (47%)
Blue background indicates that the domain is not in the aligned region.

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