DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5550 and Tnxb

DIOPT Version :9

Sequence 1:NP_001246376.1 Gene:CG5550 / 36883 FlyBaseID:FBgn0034160 Length:250 Species:Drosophila melanogaster
Sequence 2:XP_006525248.1 Gene:Tnxb / 81877 MGIID:1932137 Length:4361 Species:Mus musculus


Alignment Length:193 Identity:77/193 - (39%)
Similarity:108/193 - (55%) Gaps:14/193 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 IEVYCDVTIAGKGWLVVQRRVSVEENFYRNWTSYQTGFGDLKGNFFIGLNNLNKISSLQPQELYI 123
            ::|:||:...|.||||.|||:..:.:|:|:|..|..|||::.|.|::|...|:.::......|.:
Mouse  4173 LDVFCDMETDGGGWLVFQRRMDGQTDFWRDWEEYAHGFGNISGEFWLGNEALHSLTQAGDYSLRV 4237

  Fly   124 ELVDFAG-EKRYAHYSVFHVGNVYSNYPITQLGAYSGTAGDSLSYHLYQPFSTFDRDNDNATINC 187
            :|  .|| |..:|.|..|.|.:...||.: .|..|.||||||:|||....||..|||.:|..|:|
Mouse  4238 DL--RAGKEAVFAQYDFFRVDSAKENYRL-HLEGYHGTAGDSMSYHSGSVFSARDRDPNNLLISC 4299

  Fly   188 AARYMGAWWYRECLSRIPCSNLNGAYLGGNHTDPALFGSGIVWGEWKGFTYSYKTVNIMVRPK 250
            |..|.||||||.|    ..:||||.|  |:..|    ..|:.|..||||.:|.....:.:||:
Mouse  4300 AVSYRGAWWYRNC----HYANLNGLY--GSTVD----HQGVSWYHWKGFEFSVPFTEMKLRPR 4352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5550NP_001246376.1 FReD 34..250 CDD:238040 76/191 (40%)
TnxbXP_006525248.1 EGF_2 172..200 CDD:285248
EGF_2 203..231 CDD:285248
EGF_Tenascin 236..262 CDD:376143
EGF_Tenascin 267..293 CDD:376143
EGF_Tenascin 298..325 CDD:376143
EGF_Tenascin 329..356 CDD:376143
EGF_Tenascin 360..386 CDD:376143
EGF_2 389..417 CDD:285248
EGF_Tenascin 422..448 CDD:376143
EGF_2 451..479 CDD:285248
EGF_2 482..510 CDD:285248
DSL <498..541 CDD:366627
EGF_2 541..572 CDD:285248
EGF_Tenascin 577..604 CDD:376143
EGF_2 608..634 CDD:285248
EGF_Tenascin 639..665 CDD:376143
EGF_Tenascin 706..732 CDD:376143
fn3 737..818 CDD:365830
fn3 830..906 CDD:365830
fn3 1074..1142 CDD:365830
fn3 1295..1369 CDD:365830
FN3 1386..1466 CDD:238020
fn3 1484..1558 CDD:365830
fn3 1599..1674 CDD:365830
fn3 1707..1782 CDD:365830
fn3 1804..1874 CDD:365830
fn3 1904..1971 CDD:365830
fn3 2000..2067 CDD:365830
fn3 2102..2164 CDD:365830
FN3 2211..2279 CDD:238020
fn3 2315..2393 CDD:365830
fn3 2426..2496 CDD:365830
fn3 2525..2600 CDD:365830
fn3 2639..2709 CDD:365830
fn3 2748..2823 CDD:365830
fn3 2861..2931 CDD:365830
fn3 2970..3043 CDD:365830
fn3 3076..3146 CDD:365830
fn3 3183..3258 CDD:365830
fn3 3291..3361 CDD:365830
fn3 3387..3462 CDD:365830
fn3 3480..3542 CDD:365830
fn3 3569..3649 CDD:365830
fn3 3679..3752 CDD:365830
fn3 3776..3855 CDD:365830
fn3 3875..3953 CDD:365830
FN3 3962..4048 CDD:238020
fn3 4052..4129 CDD:365830
Fibrinogen_C 4143..4352 CDD:278572 76/191 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 170 1.000 Domainoid score I3753
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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