DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5550 and Angptl1

DIOPT Version :9

Sequence 1:NP_001246376.1 Gene:CG5550 / 36883 FlyBaseID:FBgn0034160 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_001102853.1 Gene:Angptl1 / 679942 RGDID:1598128 Length:300 Species:Rattus norvegicus


Alignment Length:142 Identity:29/142 - (20%)
Similarity:50/142 - (35%) Gaps:54/142 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MKPICFALCV--FSLGLFYLASAEIGENVKIQTYKKY--SSSCKELNPKKSGVQKIQVGSDVIEV 61
            ||...:.|.|  |.||:.:....:.  .:|..|.::|  ::..||...|                
  Rat     1 MKTFVWILSVVLFLLGIGHCKGGQF--KIKKTTQRRYPRATDGKEETKK---------------- 47

  Fly    62 YCDVTIAGKGWLVVQRRVSVEENFYRNWTSYQTG----------FGDLKGNFF-IGLNNLNKISS 115
             |..|     :||.::::              ||          .|.:|.... :.|.||..:.|
  Rat    48 -CSYT-----FLVPEQKI--------------TGPICVNTKGQDAGTIKDMITRMDLENLKDVLS 92

  Fly   116 LQPQEL-YIELV 126
            .|.:|: .::||
  Rat    93 RQKREIDVLQLV 104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5550NP_001246376.1 FReD 34..250 CDD:238040 20/107 (19%)
Angptl1NP_001102853.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2579
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm12326
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X25
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.810

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