DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5550 and col11a2

DIOPT Version :9

Sequence 1:NP_001246376.1 Gene:CG5550 / 36883 FlyBaseID:FBgn0034160 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_001005799.1 Gene:col11a2 / 448277 XenbaseID:XB-GENE-12564499 Length:340 Species:Xenopus tropicalis


Alignment Length:197 Identity:80/197 - (40%)
Similarity:109/197 - (55%) Gaps:8/197 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 GSDVIEVYCDVTIAGKGWLVVQRRVSVEENFYRNWTSYQTGFGDLKGNFFIGLNNLNKISSLQPQ 119
            |:..|:|.||:...|.||:|.||||....:|||:|.||:.|||.....|::|..|:::::|....
 Frog   150 GNKPIKVLCDMDTDGGGWIVFQRRVDGSVDFYRDWKSYKQGFGSQLSEFWLGNENIHRLTSSGNF 214

  Fly   120 ELYIELVDFAGEKRYAHYSVFHVGNVYSNYPITQLGAYSGTAGDSLSYHLYQPFSTFDRDNDNAT 184
            :|..:|.||...:.||.||.|.:.....||.:.......|.|||||..|..:.|||.|.|||.|:
 Frog   215 QLRFDLEDFDNNRTYATYSQFRLEPESQNYTLRFREFTGGPAGDSLFTHKDRAFSTKDADNDPAS 279

  Fly   185 -INCAARYMGAWWYRECLSRIPCSNLNGAYLGGNHTDPALFGSGIVWGEWKGFTYSYKTVNIMVR 248
             .|||.||.|||||..|..    |.|||.|:.|.| |.|  ..|:.|.:::|..||.|...:.:|
 Frog   280 KTNCAERYKGAWWYESCYH----SCLNGEYMRGQH-DKA--DGGVHWAKFRGVNYSLKVSEMKLR 337

  Fly   249 PK 250
            |:
 Frog   338 PE 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5550NP_001246376.1 FReD 34..250 CDD:238040 79/195 (41%)
col11a2NP_001005799.1 Collagen 45..110 CDD:189968
FReD 128..338 CDD:238040 78/194 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 171 1.000 Inparanoid score I3986
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000029
OrthoInspector 1 1.000 - - mtm14088
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X25
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.960

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