DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5550 and Fibcd1

DIOPT Version :9

Sequence 1:NP_001246376.1 Gene:CG5550 / 36883 FlyBaseID:FBgn0034160 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_001101299.1 Gene:Fibcd1 / 311861 RGDID:1309097 Length:459 Species:Rattus norvegicus


Alignment Length:196 Identity:86/196 - (43%)
Similarity:115/196 - (58%) Gaps:15/196 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 EVYCDVTIAGKGWLVVQRRVSVEENFYRNWTSYQTGFGDLKGNFFIGLNNLNKISSLQPQELYIE 124
            :||||:...|.||.|.|||.....||:|.|.:|:.|||.|.|..::||..::.:::....||:::
  Rat   268 QVYCDMRTDGGGWTVFQRREDGSVNFFRGWEAYREGFGKLTGEHWLGLKRIHALTTQAAYELHVD 332

  Fly   125 LVDFAGEKRYAHYSVFHVGNVYS------NYPITQLGAYSGTAGDSLSYHLYQPFSTFDRDNDNA 183
            |.||.....||||..|.|| ::|      .||:| :..|||||||||..|....|:|.|||:|::
  Rat   333 LEDFDNGTAYAHYGSFGVG-LFSVDPEEDGYPLT-VADYSGTAGDSLLKHSGMRFTTKDRDSDHS 395

  Fly   184 TINCAARYMGAWWYRECLSRIPCSNLNGAYLGGNHTDPALFGSGIVWGEWKGFTYSYKTVNIMVR 248
            ..||||.|.||||||.|.:    |||||.||.|.|   |.:..|:.|..|.|:.||.|...:.:|
  Rat   396 ENNCAAFYRGAWWYRNCHT----SNLNGQYLRGPH---ASYADGVEWSSWTGWQYSLKFSEMKIR 453

  Fly   249 P 249
            |
  Rat   454 P 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5550NP_001246376.1 FReD 34..250 CDD:238040 86/196 (44%)
Fibcd1NP_001101299.1 FReD 239..455 CDD:238040 86/196 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2579
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000029
OrthoInspector 1 1.000 - - mtm12326
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19143
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X25
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.910

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