DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5550 and Fga

DIOPT Version :9

Sequence 1:NP_001246376.1 Gene:CG5550 / 36883 FlyBaseID:FBgn0034160 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_001104518.1 Gene:Fga / 14161 MGIID:1316726 Length:789 Species:Mus musculus


Alignment Length:234 Identity:86/234 - (36%)
Similarity:118/234 - (50%) Gaps:33/234 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 LNPKKSGVQ------KIQVGSDVIEVYCDVTIAGKGWLVVQRRVSVEENFYRNWTSYQTGFGDL- 99
            |..:.||.|      |....|.|..||||...:..|||::|:|:....||.|.|..|:.|||.| 
Mouse   559 LQTQTSGAQNGIFSIKPPGSSKVFSVYCDQETSLGGWLLIQQRMDGSLNFNRTWQDYKRGFGSLN 623

  Fly   100 ---KGNFFIGLNNLNKISSLQPQELYIELVDFAGEKRYAHYSVFHVGNVYSNYPITQLGAYSGTA 161
               :|.|::| |:...:.:|:...|.:||.|:||::.||.|. |.||:....|.: |:.:|.|||
Mouse   624 DKGEGEFWLG-NDYLHLLTLRGSVLRVELEDWAGKEAYAEYH-FRVGSEAEGYAL-QVSSYRGTA 685

  Fly   162 GDSL-----------SYHLYQPFSTFDRDNDNATINCAARYMGAWWYRECLSRIPCSNLNGAYLG 215
            ||:|           :.|....|||||||.|....|||..|.|.|||..|    ..:||||.|..
Mouse   686 GDALVQGSVEEGTEYTSHSNMQFSTFDRDADQWEENCAEVYGGGWWYNSC----QAANLNGIYYP 746

  Fly   216 GNHTDPA-----LFGSGIVWGEWKGFTYSYKTVNIMVRP 249
            |...||.     ...:|:||..::|..||.:.|.:.:||
Mouse   747 GGTYDPRNNSPYEIENGVVWVPFRGADYSLRAVRMKIRP 785

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5550NP_001246376.1 FReD 34..250 CDD:238040 86/234 (37%)
FgaNP_001104518.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 263..420
Fibrinogen_aC 392..457 CDD:288972
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 526..555
FReD 550..786 CDD:238040 86/234 (37%)
Fib_alpha 51..190 CDD:285864
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2579
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.