DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5550 and LOC108179162

DIOPT Version :9

Sequence 1:NP_001246376.1 Gene:CG5550 / 36883 FlyBaseID:FBgn0034160 Length:250 Species:Drosophila melanogaster
Sequence 2:XP_017211437.2 Gene:LOC108179162 / 108179162 -ID:- Length:243 Species:Danio rerio


Alignment Length:254 Identity:91/254 - (35%)
Similarity:137/254 - (53%) Gaps:23/254 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ALCVFSLGLFYLASAEIGENVKIQTYKKYSSSCKEL---NPKKSGVQKIQVGSDV-IEVYCDVTI 67
            |:.||.:.|..:.:|.:     :..:|.:  .|.|:   ....||:..|....|: :.|||.:..
Zfish     2 AMTVFVVALLSVFTASV-----VSGFKPF--DCSEIYRSGQTVSGIYSIYPAGDIPVWVYCQMIS 59

  Fly    68 AGK-----GWLVVQRRVSVEENFYRNWTSYQTGFGDLKGNFFIGLNNLNKISSLQPQELYIELVD 127
            .||     ||.|.|||:....|||:.|..|:.|||..:|.:::||.||.:::..:...|.::|.|
Zfish    60 DGKDEENGGWTVFQRRMDGRINFYQPWEEYKRGFGTTEGEYWLGLENLYQLTRHKKFMLRVDLED 124

  Fly   128 FAGEKRYAHYSVFHVGNVYSNYPITQLGAYSGTAGDSLSYHLYQPFSTFDRDNDNATINCAARYM 192
            |.|.:.:|.||.|.||:....|.:...|...|.|||||:.|..|.|||||:|.|....|||..::
Zfish   125 FEGRRGFAQYSSFSVGSEAEGYRLQVSGFTDGGAGDSLTDHNDQKFSTFDKDQDAYGDNCAQEFL 189

  Fly   193 GAWWYRECLSRIPCSNLNGAYLGGNHTDPALFGSGIVWGEWK-GFTYSYKTVNIMVRPK 250
            ||:|::.|.:    :|.||.||.|.  |...||.|:||..|| .||.|.|::::|::.|
Zfish   190 GAFWFKYCHN----TNPNGVYLWGE--DDTHFGIGVVWSTWKDSFTVSMKSLSLMIKSK 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5550NP_001246376.1 FReD 34..250 CDD:238040 84/225 (37%)
LOC108179162XP_017211437.2 FReD 24..242 CDD:238040 84/225 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2579
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D405297at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.