DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG5550 and LOC100495637

DIOPT Version :9

Sequence 1:	NP_001246376.1	Gene:	CG5550 / 36883	FlyBaseID:	FBgn0034160	Length:	250	Species:	Drosophila melanogaster
Sequence 2:	XP_004917595.2	Gene:	LOC100495637 / 100495637	-ID:	-	Length:	289	Species:	Xenopus tropicalis

Alignment Length:	229	Identity:	86/229 - (37%)
Similarity:	123/229 - (53%)	Gaps:	30/229 - (13%)

- Green bases have known domain annotations that are detailed below.

  Fly    36 SSSCKELNPKKSGVQKIQVGSDV-------------IEVYCDVTIAGKGWLVVQRRVSVEENFYR 87
            :.:|||.         :..||.:             :.|:||:...|.||.|.|||.....:|||
Frog    76 TKNCKEW---------LDQGSSITGWYPIYTPTGRRLLVFCDMETDGGGWTVFQRRADGSVDFYR 131

  Fly    88 NWTSYQTGFGDLKGNFFIGLNNLNKISSLQPQELYIELVDFAGEKRYAHYSVFHVGNVYSNYPIT 152
            :|.||:.|||..:..|::|.:||:.:::....:|.::|.||:.::.||.||.|.:.....||.::
Frog   132 DWNSYKRGFGRKESEFWLGNDNLHLLTATGNFQLRVDLTDFSEQRTYAAYSNFRIAGEAQNYTLS 196

  Fly   153 QLGAYSGTAGDSLSYHLYQPFSTFDRDND-NATINCAARYMGAWWYRECLSRIPCSNLNGAYLGG 216
            ..|...|.||||||.|....||:.||||| :.|.:||..|.|.|||.:|..    |||||.||||
Frog   197 LGGFTGGDAGDSLSGHNGYSFSSKDRDNDVHLTGSCAQSYKGGWWYSKCHG----SNLNGLYLGG 257

  Fly   217 NHTDPALFGSGIVWGEWKGFTYSYKTVNIMVRPK 250
            |||.   :.:|:.|...||:.||||...:..||:
Frog   258 NHTS---YANGVNWSAGKGYHYSYKVSEMKFRPQ 288

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG5550	NP_001246376.1	FReD	34..250	CDD:238040	85/227 (37%)
LOC100495637	XP_004917595.2	Collagen	40..>75	CDD:396114
LOC100495637	XP_004917595.2	FReD	77..287	CDD:238040	84/225 (37%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	1	1.000	-	-		H1518
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.000