DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5550 and LOC100493748

DIOPT Version :9

Sequence 1:NP_001246376.1 Gene:CG5550 / 36883 FlyBaseID:FBgn0034160 Length:250 Species:Drosophila melanogaster
Sequence 2:XP_002945140.2 Gene:LOC100493748 / 100493748 -ID:- Length:227 Species:Xenopus tropicalis


Alignment Length:218 Identity:82/218 - (37%)
Similarity:111/218 - (50%) Gaps:17/218 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 SCKEL---NPKKSGVQKIQV-GSDVIEVYCDVTIAGKGWLVVQRRVSVEENFYRNWTSYQTGFGD 98
            :||||   ....||...|.. |...::|.||:...|.||:|.|||.....:||..|.||:.|||.
 Frog    20 NCKELLHQGVVMSGWYTIYPDGMAPLQVLCDMDTDGGGWIVFQRRYDGSVDFYLGWDSYKRGFGS 84

  Fly    99 LKGNFFIGLNNLNKISSLQPQELYIELVDFAGEKRYAHYSVFHVGNVYSNYPITQLGAY-SGTAG 162
            ....|::|.:||:..:|....|:.::|.||...:.||.||.|.|.....:|.:. :|.| :|.||
 Frog    85 RLTEFWLGNDNLSNFTSSGTWEMRVDLRDFDNIQHYAKYSSFRVLPESDSYTLI-IGPYVAGDAG 148

  Fly   163 DSLSYHLYQPFSTFDRDNDNATINCAARYMGAWWYRECLSRIPCSNLNGAY-LGGNHTDPALFGS 226
            ||:||..|..|:|.|||||.....||....|||||:.|.:    :||||.| |..|:..     .
 Frog   149 DSMSYSNYSKFTTKDRDNDMYEGKCADIDRGAWWYKICYN----ANLNGFYHLAQNYNI-----D 204

  Fly   227 GIVWGEWKGFTYSYKTVNIMVRP 249
            .|.|.. .|..||:|...:.:||
 Frog   205 SICWLS-LGSYYSFKFTEMKMRP 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5550NP_001246376.1 FReD 34..250 CDD:238040 82/218 (38%)
LOC100493748XP_002945140.2 FReD 19..227 CDD:238040 82/218 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 171 1.000 Inparanoid score I3986
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000029
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X25
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.050

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