DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5550 and tnxb

DIOPT Version :9

Sequence 1:NP_001246376.1 Gene:CG5550 / 36883 FlyBaseID:FBgn0034160 Length:250 Species:Drosophila melanogaster
Sequence 2:XP_031747219.1 Gene:tnxb / 100489649 XenbaseID:XB-GENE-481849 Length:2840 Species:Xenopus tropicalis


Alignment Length:209 Identity:87/209 - (41%)
Similarity:120/209 - (57%) Gaps:17/209 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 KSGVQKIQVG---SDVIEVYCDVTIAGKGWLVVQRRVSVEENFYRNWTSYQTGFGDLKGNFFIGL 107
            :|||..|.:|   .|.:.||||:...|.||:|.|||:....:|:|||..|:.|||:|...|::|.
 Frog  2637 QSGVFTIYLGGSKDDPLLVYCDMETDGGGWIVFQRRIDGRTDFWRNWRQYKEGFGNLTSEFWLGN 2701

  Fly   108 NNLNKISSLQPQELYIELVDFAG-EKRYAHYSVFHVGNVYSNYPITQLGAYSGTAGDSLSYHLYQ 171
            ..|:::|||.|.||.::|  .|| |..||.|..|.|.....::.: ::|||.|.||||||||...
 Frog  2702 IALHRLSSLAPYELRVDL--RAGAEAAYAVYEDFRVEGEDKHFRL-RIGAYRGNAGDSLSYHNNM 2763

  Fly   172 PFSTFDRDNDNATINCAARYMGAWWYRECLSRIPCSNLNGAYLGGNHTDPALFGSGIVWGEWKGF 236
            .|||.|||.:...:.|:..|.|||||:.|    ..:||||.|  ||:.|    ..|:.|..||||
 Frog  2764 IFSTRDRDAEKRILPCSISYRGAWWYKNC----HYANLNGMY--GNNKD----HQGVNWHTWKGF 2818

  Fly   237 TYSYKTVNIMVRPK 250
            .:|.....:.:||:
 Frog  2819 EFSIPFTEMKMRPQ 2832

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5550NP_001246376.1 FReD 34..250 CDD:238040 86/207 (42%)
tnxbXP_031747219.1 EGF_Tenascin 179..206 CDD:376143
exchanger_TraA <400..779 CDD:411343
EGF_Tenascin 799..826 CDD:376143
fn3 834..913 CDD:394996
FN3 923..998 CDD:214495
fn3 1790..1852 CDD:394996
fn3 1881..1960 CDD:394996
fn3 1972..2051 CDD:394996
fn3 2064..2141 CDD:394996
fn3 2170..2245 CDD:394996
fn3 2267..2338 CDD:394996
FN3 2356..2433 CDD:238020
fn3 2445..2522 CDD:394996
fn3 2531..2609 CDD:394996
FReD 2622..2831 CDD:238040 85/206 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000029
OrthoInspector 1 1.000 - - mtm14088
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X25
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.910

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