DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5550 and LOC100485312

DIOPT Version :10

Sequence 1:NP_001246376.1 Gene:CG5550 / 36883 FlyBaseID:FBgn0034160 Length:250 Species:Drosophila melanogaster
Sequence 2:XP_031759838.1 Gene:LOC100485312 / 100485312 XenbaseID:XB-GENE-29077735 Length:308 Species:Xenopus tropicalis


Alignment Length:221 Identity:78/221 - (35%)
Similarity:110/221 - (49%) Gaps:23/221 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 SCKELNPK---KSGVQKIQV-GSDVIEVYCDVTIAGKGWLVVQRRVSVEENFYRNWTSYQTGFGD 98
            :||||..:   .||...|.. |...::|.||:...|.||:|.|||.....:||..|.||:.|||.
 Frog   101 NCKELLDQGVVMSGWYTIYPDGMVPLQVLCDMDTDGGGWIVFQRRYDGSVDFYLGWDSYKRGFGS 165

  Fly    99 LKGNFFIGLNNLNKISSLQPQELYIELVDFAGEKRYAHYSVFHVGNVYSNYPITQLGAY-SGTAG 162
            ....|::|.:||:..:|....|:.:::..:...:.||.||.|.|.....:|.:. :|.| :|.||
 Frog   166 RLTEFWLGNDNLSNFTSSGTWEMRVDMRYYDNIQHYAKYSSFRVLPESDSYTLI-IGPYVAGDAG 229

  Fly   163 DSLSYHLYQPFSTFDRDNDNAT-INCAARYMGAWWYRECLSRIPCSNLNGAYL-GGNHTDPALFG 225
            ||:||..|..|:|.|.|||:.. .|||....|||||:.|.    .:||||.|. .|.:|:     
 Frog   230 DSMSYSNYSKFTTKDWDNDDMPGDNCADYGHGAWWYKYCY----LANLNGLYQEQGYNTE----- 285

  Fly   226 SGIVWGEW--KGFTYSYKTVNIMVRP 249
                ...|  .|..||.|...:.:||
 Frog   286 ----CNCWLTLGSYYSLKFSEMKMRP 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5550NP_001246376.1 FReD 34..250 CDD:238040 78/221 (35%)
LOC100485312XP_031759838.1 Collagen 52..91 CDD:460189
FReD 100..307 CDD:238040 76/219 (35%)
Blue background indicates that the domain is not in the aligned region.

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