DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RalGPS and Rasgef1c

DIOPT Version :10

Sequence 1:NP_725613.1 Gene:RalGPS / 36881 FlyBaseID:FBgn0034158 Length:702 Species:Drosophila melanogaster
Sequence 2:NP_001334391.1 Gene:Rasgef1c / 74563 MGIID:1921813 Length:469 Species:Mus musculus


Alignment Length:482 Identity:108/482 - (22%)
Similarity:165/482 - (34%) Gaps:156/482 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 SPPPPPSQQQQQPTRVSKQRSPNTNGSAHTM-------ACLRQEKTY------------------ 85
            ||||..|.:.:|..:.....:| ::.|..|:       |....||.|                  
Mouse    20 SPPPTESTEGEQAGQPLLDGAP-SSASLDTLIQHLVPTADYYPEKAYIFTFLLSSRLFIEPRELL 83

  Fly    86 --------KEQQMEPPSMQPQ-----ASKTLNI---------KSTRRKNSIG-----------C- 116
                    ::||::.|.:...     .:|.|.:         :....:::||           | 
Mouse    84 ARVCHLCIEQQQLDKPVLDKARVRKFGAKLLQLLAEWTETFPRDFEEESTIGHLTDVVGRISPCD 148

  Fly   117 -----------------LNSFSSSPDS-PGCYYTIAASAAPPSKSQSLPAHASIKQLDAVILSAL 163
                             |.|....|:| .|....|:....||         |||.:      ..|
Mouse   149 ETYGSRVHQLLQTLHQKLASLGQGPESLVGADKPISYRTKPP---------ASIHR------ELL 198

  Fly   164 RVPAD--VLANQITLLDFPVFAQIQPDELSSCAWTKKDKHVNTP--------NIVAFTKRFNHTS 218
            .|.:|  .||.|:|.::......|.|:|... |:..||....|.        |:.|:.|.||...
Mouse   199 GVCSDPYTLAQQLTHVELERLRHIGPEEFVQ-AFVNKDPLAGTKPRFSDKTNNVEAYVKWFNRLC 262

  Fly   219 FWTVQEILNAEQPKQRAEIITHFIKVAKKLHELNNLHSLFAIISAMQSASIYRLTKTWACLSKKD 283
            :....||....:.||||::|..||.||::...:.|.:||.||||.|..:.:.||.||||   |..
Mouse   263 YLVATEICMPAKKKQRAQVIEFFIDVARECFNIGNFNSLMAIISGMNMSPVSRLKKTWA---KVK 324

  Fly   284 RNAFDRLSDIFSDQDNWANLRSYL-----------ESLRLPCIPYLGLFLTDLIYIDLAHPHKGG 337
            ...|..|........|:.|.|:.|           .|.....||:..|.:.|:.:::        
Mouse   325 TAKFFILEHQMDPTGNFCNYRTALRGAAHRSLTAHSSREKIVIPFFSLLIKDIYFLN-------- 381

  Fly   338 LEPEQRRNKMNNILRVISNYQQSNY-KHLQKHEATQKYLT------------SIRYIEELQNIFE 389
               |...|::.|        ...|: |.|:..:...:::|            ||.:......||.
Mouse   382 ---EGCANRLPN--------GHVNFEKFLELAKQVGEFITWKQVECPFEQDPSITHYLYTAPIFS 435

  Fly   390 EDQYKRSLNLEPASPSGPSSSSCSSKE 416
            ||      .|..||....|..|.:.||
Mouse   436 ED------GLYLASYESESPESQTEKE 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RalGPSNP_725613.1 RasGEF 169..335 CDD:459872 53/184 (29%)
PH_RalGPS1_2 578..692 CDD:270120
Rasgef1cNP_001334391.1 REM 45..160 CDD:100121 14/114 (12%)
RasGEF 207..398 CDD:459872 57/213 (27%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.