DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5522 and rapgef2b

DIOPT Version :9

Sequence 1:NP_725613.1 Gene:CG5522 / 36881 FlyBaseID:FBgn0034158 Length:702 Species:Drosophila melanogaster
Sequence 2:XP_017214661.1 Gene:rapgef2b / 557693 ZFINID:ZDB-GENE-030131-6959 Length:1634 Species:Danio rerio


Alignment Length:760 Identity:146/760 - (19%)
Similarity:245/760 - (32%) Gaps:262/760 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SEISRDLSTDNLRYSELSRKPTTDYNGYTGQAYAATQFKQSSPPPPPS----------------- 52
            :.:|..:.|:.|.:.||..:|..|..    |.......:::..|..|.                 
Zfish   618 THLSITVKTNLLVFKELLARPDQDQE----QEQEEEPDRKNGAPHIPKIGDIKKASRYSIPDLAV 678

  Fly    53 --QQQQQPTRVSKQRSPNTNGSAH--------TMACLRQEKTY----------------KEQQME 91
              :|.....:.||:...|:.|..:        |:..:...|.|                |:.:..
Zfish   679 DVEQVMDLEKASKKAKANSAGGRNKLKKIFDKTLTSILPPKPYNDVGVGQSQDDSIVGLKQSKQI 743

  Fly    92 PPSM-------------------------QPQA------------------SKTLNI-KSTRRKN 112
            ||::                         ||:|                  |:.:.| |.|..|.
Zfish   744 PPALPVSGNLSSSNPDLLQSHHRILDFNNQPEAVPINMSDQVLRVFKADQQSRYIMIGKDTTAKE 808

  Fly   113 SIG-CLNSFSSSPDSPGCYYTIAASAAPPS---KSQSLPAHASIKQLDAVILSA----------- 162
            .:. .:..|:.:..:..  |::...:..|.   |.:.||...| |..|.:.||.           
Zfish   809 VVAQAIREFALTAAAEA--YSLCEVSVTPEGVIKQRRLPEQLS-KLADRIQLSGRYYLKSNMETE 870

  Fly   163 -------------------LRVPADVLANQITLLDFPVFAQIQPDELSSCAWTKKDKHVNTPNIV 208
                               |::....:|.|:::..|.:|..|:|.|.....:..|.:....|::.
Zfish   871 TLCSDEDAQELLRESHISLLQLSTVEVATQLSMRAFELFCAIEPTEYIDDLFKLKTRLTGPPSLK 935

  Fly   209 AFTKRFNHTSFWTVQEILNAEQPKQRAEIITHFIKVAKKLHELNNLHSLFAIISAMQSASIYRLT 273
            .|.:..|..:||...|::......:|.:|:.||||:|....|..|.:|:|||||.:..|.:.||.
Zfish   936 LFEEAINRETFWVATEVVREANQLKRMKIVKHFIKIALHCRECKNFNSMFAIISGLNLAPVSRLR 1000

  Fly   274 KTWACLSKKDRNAFDRLSDIFSDQDNWANLRSYLES--LRLPCIPYLGLFLTDLIYIDLAHPHKG 336
            .||..|..|....|..|.|:|....|.|..|:.|.|  |:.|.||...:...||.::     |:|
Zfish  1001 GTWEKLPSKYEKLFSDLQDLFDPSRNMAKYRNLLNSQNLQPPIIPLFPVIKKDLTFL-----HEG 1060

  Fly   337 ------------------------------GLEP----EQRRNKMNNI---------LRVISNYQ 358
                                          .::|    ..|:.|..::         ..|:...|
Zfish  1061 NDSKVDGLVNFEKLRMIAKEIRHVGRMAAVNMDPALMFRTRKKKWRSLGSLSQGSANAAVLDVTQ 1125

  Fly   359 QSNYKHLQKHEATQKYLTSIRYIEELQNIFEEDQYKRSLNLEPASPSGPSSSSCSSKESFNVEVV 423
            ...:|   |......:|.:.:..|:.|...:..||..:|.||            :::||      
Zfish  1126 TGGHK---KRVRRSSFLNAKKLYEDAQMARKVKQYLSNLTLE------------TNEES------ 1169

  Fly   424 TPALGCLNLSPAKTIGSMRMASGTKFVPGHRKCRSLGTKFRSSSLPRNFAEKCQCCIVMIA---- 484
               |..|::....:|.::..:||.:..|......|     |:::..|...:|....:.:.|    
Zfish  1170 ---LQTLSMQCEPSINTLPKSSGDRKRPDTSPVVS-----RAATHQRQQLQKANQALQVPAVALY 1226

  Fly   485 -----------PGIGTISNKRCRCRRIFGKIATHNHSDGHPHHLHLELDPSQVQPRHHLLDDSVL 538
                       |..||.|.:..:      ||.:.:...|..|....|              |||.
Zfish  1227 PSRKKVPVKDLPPFGTSSPQSLK------KILSLSEEAGDRHRKQAE--------------DSVS 1271

  Fly   539 EHSDALSQADLTSLESAEGIMCDFTGSDCDLMSPEAAAA---MHG 580
            .:|..||... ||..|                ||:.|.|   .||
Zfish  1272 NNSSQLSSPP-TSPHS----------------SPKKAIASIRSHG 1299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5522NP_725613.1 RasGEF 163..400 CDD:214539 67/281 (24%)
PH_RalGPS1_2 578..692 CDD:270120 2/3 (67%)
PH 578..685 CDD:278594 2/3 (67%)
rapgef2bXP_017214661.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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