DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5522 and PDZ-GEF

DIOPT Version :9

Sequence 1:NP_725613.1 Gene:CG5522 / 36881 FlyBaseID:FBgn0034158 Length:702 Species:Drosophila melanogaster
Sequence 2:NP_609012.2 Gene:PDZ-GEF / 33881 FlyBaseID:FBgn0265778 Length:1573 Species:Drosophila melanogaster


Alignment Length:739 Identity:146/739 - (19%)
Similarity:229/739 - (30%) Gaps:274/739 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   163 LRVPADVLANQITLLDFPVFAQIQPDELSSCAWTKKDKHVNTPNIVAFTKRFNHTSFWTVQEILN 227
            |.:.|..||.|:||.||..|.||:..|.....:..:.:: ..|.:..|.:..|...||.|.||..
  Fly   865 LHLNAYELAIQLTLQDFANFRQIESTEYVDELFELRSRY-GVPMLSKFAELVNREMFWVVSEICA 928

  Fly   228 AEQPKQRAEIITHFIKVAKKLHELNNLHSLFAIISAMQSASIYRLTKTWACLSKKDRNAFDRLSD 292
            .....:|.:|:..|||:|:...|..|.:|:|||:|.:...::.||.:||..|..|.:..|:.|.|
  Fly   929 EHNIVRRMKIVKQFIKIARHCKECRNFNSMFAIVSGLGHGAVSRLRQTWEKLPSKYQRLFNDLQD 993

  Fly   293 IFSDQDNWANLRSYLESLRL---PCIPYLGLFLTDLIYIDLAHPHK-GGLEPEQRRNKMNNILRV 353
            :.....|.:..|..:.:..|   |.||:..:...||.:|.|.:..: .||...::...:...:|:
  Fly   994 LMDPSRNMSKYRQLVSAELLAQHPIIPFYPIVKKDLTFIHLGNDTRVDGLINFEKLRMLAKEVRL 1058

  Fly   354 ISNYQQSNYKHLQ----KHEATQKYLTSIRYIEELQN---------------------------- 386
            :::...|.|..|.    |.::....|.|:..:...|:                            
  Fly  1059 LTHMCSSPYDLLSILELKGQSPSNALFSLNQMSASQSNAAAGTVIAANAGQATIKRRKKSTAAPN 1123

  Fly   387 ---IFEEDQ---------------------YKRSLNLEPASPS---------------------- 405
               :|||.|                     :|.||..|||..|                      
  Fly  1124 PKKMFEEAQMVRRVKAYLNSLKILSDEDLLHKFSLECEPAHGSTYSGSISHGNTSHRSGGGGSIS 1188

  Fly   406 ----------GPSSSSCSSKESFNVEVVTPALGCLNLS-------PAKTIGSMRMASGTKFVPGH 453
                      |..|||.::.:..::...|.:....|.|       |:..  ::...|.|.....|
  Fly  1189 GGAGGSSGGGGGGSSSLNAGDQLSIYSHTSSSSAPNSSLSLRKRHPSSP--TLSTTSSTSSTSDH 1251

  Fly   454 --RKCRSLGTKFRSSS----------------------LPRNFAEKCQCCI-------------- 480
              |:..:.|.||.::|                      :||:.:.......              
  Fly  1252 QRRQMHNNGPKFGTASPQAVKKMLSLSESSKIRPHQPFVPRHGSTMAGVIPPLHHMHAAHGFSTP 1316

  Fly   481 ----VMIAPGIGTISNKRCR-----C--RRIF--GKI----ATH--NHSDGHPHHLHLELDPSQV 526
                |:.:|....::|.:|.     |  ||:.  |.|    |.|  :|||          .|:..
  Fly  1317 SPGGVVTSPATSAVANVQCTPSPSPCSHRRLASGGNIIPSRAIHERSHSD----------TPAPP 1371

  Fly   527 QPRHHLLDDSVLEHSDALSQADL---TSLESAEGIMCD--------------------------- 561
            .|...:  |..||.|...:..||   .|:.|.....||                           
  Fly  1372 PPLPSV--DLSLESSSVTTFRDLPLRKSVTSGSISSCDSGYVHQQQHYHLQYQQQQQQNSSQHEP 1434

  Fly   562 ----FTGSDCDLMS-----------------------------------------PEAAAAMHGC 581
                :|.:||.|:.                                         |.|||.||  
  Fly  1435 SPPVYTAADCRLLQQISNNAVTRNLNSPCQSTNTPPSTPTPPPNQPTATIQLSAPPTAAAYMH-- 1497

  Fly   582 VRRKTVQKEGRKPAVASWQRYWLQIWANSLVYFPPKSFKGSERNDFKREPCKVCPLDGWYAHVSD 646
                           |..|...||....||...||..           .|..|.||...|:|...
  Fly  1498 ---------------ARSQHQQLQQQQQSLAMPPPPP-----------PPYNVPPLGSIYSHHQG 1536

  Fly   647 NTKHKNTFELCHRTLGTVYRFRTD 670
            ....::...:..:|.|...|:..|
  Fly  1537 TAGSRHLNHMHGKTTGPQERWFPD 1560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5522NP_725613.1 RasGEF 163..400 CDD:214539 70/296 (24%)
PH_RalGPS1_2 578..692 CDD:270120 20/93 (22%)
PH 578..685 CDD:278594 20/93 (22%)
PDZ-GEFNP_609012.2 CAP_ED 128..237 CDD:237999
RasGEFN 279..400 CDD:214571
PDZ_signaling 404..494 CDD:238492
DegQ <422..494 CDD:223343
PDZ_GEF_RA 757..841 CDD:176380
RasGEF 871..1050 CDD:279011 53/179 (30%)
Rhomboid_SP 1252..>1357 CDD:289371 16/104 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467927
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23113
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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