DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5522 and sos-1

DIOPT Version :9

Sequence 1:NP_725613.1 Gene:CG5522 / 36881 FlyBaseID:FBgn0034158 Length:702 Species:Drosophila melanogaster
Sequence 2:NP_001360576.1 Gene:sos-1 / 178846 WormBaseID:WBGene00004947 Length:1493 Species:Caenorhabditis elegans


Alignment Length:573 Identity:122/573 - (21%)
Similarity:203/573 - (35%) Gaps:147/573 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 PPSQQQQQPTRVSKQRSPNTNG------SAHTMACLRQEKTYKEQQMEPPSMQPQASKTLNIKST 108
            ||...||          ||.||      ..|..:..    .:.:.|..||..|            
 Worm   827 PPGIMQQ----------PNENGDKGAADEGHVNSAF----VFGDDQQHPPQHQ------------ 865

  Fly   109 RRKNSIGCLNSFSSSPDSPGCYYTIAASAAPPSKSQSLPAHASIKQLDAVILSALRVPADVLANQ 173
                                 .||   :.:|...:|.|...|....:|...|..|. |.:: ..|
 Worm   866 ---------------------VYT---NESPKETNQVLWHTAQKGDVDHYDLLTLH-PIEI-GRQ 904

  Fly   174 ITLLDFPVFAQIQPDELSSCAWTKKDKHVNTPNIVAFTKRFNHTSFWTVQEILNAEQPKQRAEII 238
            :|||...::..|||.||...||||.:|...:|.::..|......::|..:.|:..|..::|..:.
 Worm   905 LTLLHSDLYRAIQPIELVEAAWTKAEKWRKSPQLLRLTDHSTLLTYWVSRSIVETESLEERMAMF 969

  Fly   239 THFIKVAKKLHELNNLHSLFAIISAMQSASIYRLTKTWACLSKKDRNAFDRLSDIFSDQDNWANL 303
            ...::|.....||:|...|.|..||:.|:.|:||...|..|..:.:..|||.:.:.  :..|..:
 Worm   970 NRVLEVMSVFEELHNFTGLVAFYSALNSSCIFRLKWCWDGLDNEKKKCFDRFNTLC--ERRWQEM 1032

  Fly   304 RSYLESLRLPCIPYLGLFLTDLIYIDLAH--------PH-KGGLEPEQRRN-------------- 345
            :..|.|:..||||:.|.:|:::.:::..:        || ..|.:.:|:.:              
 Worm  1033 QKRLSSINPPCIPFFGHYLSNIYFLEQGNSTFVNKSPPHGAAGAQKQQKDDLKASDPENSNKQFK 1097

  Fly   346 ---------KMNNILRVISNYQQSNYKHLQKHEATQKYLTSIRYIEELQN--IFEEDQYKRSLNL 399
                     |::|::|.|..:|...|. |......:::..||....:.::  ..||..|.:||.:
 Worm  1098 QLVSFLKLRKISNVIREIQIFQDQRYS-LTLEPTIRQFFESINPKNDFKSNEDLEEYLYNKSLEI 1161

  Fly   400 EPASPSGPSSSSCSSKESFNVEVV-TPALGCLNLSPAKTIGSMRMASGTKFVPGHRKCRSLGTKF 463
            :   |.|..:.:...|...|...: :|     .:.|.|       |:|..:...|    .:|...
 Worm  1162 Q---PKGLDTPTAELKPKHNASTLRSP-----GVKPPK-------AAGNHYSANH----PIGLHL 1207

  Fly   464 RSS---SLPRNFAEKCQCCIVMIAPGIGTISNKRCRCRRIFGKIATHNHSDG------------- 512
            .|.   |.|.  |...|...|...| :.....||.         .:||..|.             
 Worm  1208 HSQNSHSAPH--AMSSQSSTVPNTP-LSAHETKRS---------LSHNQDDAPLQQFVDIRFERK 1260

  Fly   513 --HPHHLHLELDPSQVQPRHHLLDDSVLEHSDALSQADLTSLESAEGIMCDFT 563
              ||....|:  |..:.||....:.|........:||.:.....:.|:|...|
 Worm  1261 GTHPKIPVLQ--PPPLLPRSSRANQSNSVSLPPTTQAPMPPAPKSSGMMSTAT 1311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5522NP_725613.1 RasGEF 163..400 CDD:214539 66/270 (24%)
PH_RalGPS1_2 578..692 CDD:270120
PH 578..685 CDD:278594
sos-1NP_001360576.1 RhoGEF 248..447 CDD:383033
PH-like 493..604 CDD:388408
RasGEF_N 659..794 CDD:366199
RasGEF 900..1069 CDD:366198 46/171 (27%)
Neogenin_C 1148..1377 CDD:368988 40/197 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3417
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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