DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RalGPS and rapgef4b

DIOPT Version :10

Sequence 1:NP_725613.1 Gene:RalGPS / 36881 FlyBaseID:FBgn0034158 Length:702 Species:Drosophila melanogaster
Sequence 2:NP_001108368.1 Gene:rapgef4b / 100141331 ZFINID:ZDB-GENE-080219-4 Length:427 Species:Danio rerio


Alignment Length:137 Identity:25/137 - (18%)
Similarity:44/137 - (32%) Gaps:46/137 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   547 ADLTSLESAEGIMC------DFTGSDCDLMSPEAAAAMHGCVRRKTVQKEGRKPAVASWQRY--- 602
            |...|:.|||.|:|      :.:|.|.|::.                   .|...|.:::::   
Zfish     6 ASAHSVASAEWIICLDKRPAERSGEDVDIIL-------------------ARLKGVKAFEKFHPN 51

  Fly   603 -WLQIWANSLVYFPPKSFKGSERNDFKREPCKVCPLDGWYA--------HVSDNTKHKNTFELCH 658
             ..||.......:..|......:.|..         ..|||        .||:...|::...:|.
Zfish    52 LLQQICMCGFYEYLEKGITLYRQGDIG---------TSWYAVLSGSLDVKVSETANHQDAVTICT 107

  Fly   659 RTLGTVY 665
            ..:||.:
Zfish   108 LGVGTAF 114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RalGPSNP_725613.1 RasGEF 169..335 CDD:459872
PH_RalGPS1_2 578..692 CDD:270120 15/100 (15%)
rapgef4bNP_001108368.1 CAP_ED 44..153 CDD:237999 13/80 (16%)
DEP_Epac 204..332 CDD:239884
CAP_ED 356..>406 CDD:237999
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.