DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp53D and Actl6b

DIOPT Version :9

Sequence 1:NP_477037.2 Gene:Arp53D / 36879 FlyBaseID:FBgn0011743 Length:411 Species:Drosophila melanogaster
Sequence 2:XP_006504698.1 Gene:Actl6b / 83766 MGIID:1933548 Length:434 Species:Mus musculus


Alignment Length:446 Identity:148/446 - (33%)
Similarity:226/446 - (50%) Gaps:84/446 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 MSSEVDSNSHHAAVVIDNGSGVCKAGFSPEDTPRAVFPSIVGRPRHLNVLLDSVIGDSVIGEAAA 100
            ||..|.......|:|.|.||...:||::.||.|:|.||:.||       ||.:..|..:..|...
Mouse     1 MSGGVYGGDEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVG-------LLAAEEGGGLELEGEK 58

  Fly   101 RKRGIL---------------TLKYPIEHGMVKNWDEMEMVWQHTY-ELLRADPMDLPALLTEAP 149
            .|:|.:               .:..|:::||:::|:....:..||| :.::::|...|.|::|||
Mouse    59 EKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAP 123

  Fly   150 LNPKKNREKMTEIMFEHFQVPAFYVAVQAVLSLYATGRTVGIVVDSGDGVTHT--VPIYEGFALP 212
            .|.:..|||:||:|||.:.:|||::...|||:.:|.||:.|:|:||  |.|||  :|:::|:.|.
Mouse   124 WNTRAKREKLTELMFEQYNIPAFFLCKTAVLTAFANGRSTGLVLDS--GATHTTAIPVHDGYVLQ 186

  Fly   213 HACVRVDLAGRDLTDYLCKLLLERGVTMGTS-------AEREIVRE-------IKEKLCYVSMNY 263
            ...|:..||| |.....|:.|.:.   |...       |.:|.|||       .||||..||.::
Mouse   187 QGIVKSPLAG-DFISMQCRELFQE---MAIDIIPPYMIAAKEPVREGAPPNWKKKEKLPQVSKSW 247

  Fly   264 AKEM------DLHGKV------------------ETYELPDGQKIVLGCERFRCPEALFQPS--- 301
            ...|      |....|                  ..||:|:|.....|.||.|.||.||.||   
Mouse   248 HNYMCNEVIQDFQASVLQVSDSPYDEQVAAQMPTVHYEMPNGYNTDYGAERLRIPEGLFDPSNVK 312

  Fly   302 -LLGQEVMGIHEATHHSITNCDMDLR--------KDMYANIVLSGGTTMFRNIEHRFLQDLTEMA 357
             |.|..::|:......||..||:|:|        :.:|.:::::||.|:.:....|..::|::..
Mouse   313 GLSGNTMLGVGHVVTTSIGMCDIDIRPVDASPCSQGLYGSVIVTGGNTLLQGFTDRLNRELSQKT 377

  Fly   358 PPSIRIKV---NASPDRRFSVWTGGSVLASLTSFQNMWIDSLEYEEVGSAIVHRKC 410
            |||:|:|:   |::.:|:||.|.|||:||||.:||.|||...||||.|...|.|||
Mouse   378 PPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp53DNP_477037.2 ACTIN 46..411 CDD:214592 145/436 (33%)
NBD_sugar-kinase_HSP70_actin 47..411 CDD:302596 145/435 (33%)
Actl6bXP_006504698.1 Actin 11..434 CDD:306521 145/436 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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