DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp53D and ARP8

DIOPT Version :10

Sequence 1:NP_477037.2 Gene:Arp53D / 36879 FlyBaseID:FBgn0011743 Length:411 Species:Drosophila melanogaster
Sequence 2:NP_568836.2 Gene:ARP8 / 835717 AraportID:AT5G56180 Length:471 Species:Arabidopsis thaliana


Alignment Length:393 Identity:102/393 - (25%)
Similarity:163/393 - (41%) Gaps:78/393 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 NILHKYLHLPTSPGNMSSEVDSNSHHAAVVIDNGSGVCKAGFSPEDTPRAVFPSIVGRPRHLNVL 85
            :.:|.|......||             :::||.|||.||.|:|...:|.                
plant   121 SFMHIYSQRAQVPG-------------SIIIDGGSGYCKFGWSKYASPS---------------- 156

  Fly    86 LDSVIGDSVIGEAAARKRGILTLKYPIEHGMVKN--WDEMEMVWQHTYELLRADPMDLPALLTEA 148
                      |.:|..          :|.|.:::  :..::..:...:..::..|...| ::...
plant   157 ----------GRSATF----------LEFGNIESPIYARLQQFFATIFTRMQVKPSMQP-IVVSL 200

  Fly   149 PL-------NPKKNREKMTEIMFE---HFQVPAFYVAVQAVLSLYATGRTVGIVVDSGDGVTHTV 203
            ||       :.|.:|.::...:|.   ...|||.....||||:|||..||.||||:.|..|...:
plant   201 PLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQAVLALYAARRTSGIVVNIGFQVITIL 265

  Fly   204 PIYEGFALPHACVRV-DLAGRDLTDYLCKLLLERGVTMGTSAEREIVREIKEKLCYVSMNYAKEM 267
            ||..|..:....|.| ......||.:|.:.:.|..::.   .....||.:|||||||:::|..|:
plant   266 PILHGKVMRQVGVEVIGFGALKLTGFLKEKMQENNISF---QSLYTVRTLKEKLCYVALDYKAEL 327

  Fly   268 --DLHGKVETYELPDGQK-IVLGCERFRCPEALFQPSLLGQEVMGIHEATHHSITNCD-MDLRKD 328
              |....||.    .|:. ..|..|||:..|.||||.|.|...|.:|:|....:.:|| ..|..|
plant   328 SKDTQASVEV----SGEGWFTLSKERFQTGEILFQPRLAGMRAMSLHQAVSLCMDHCDAAGLTGD 388

  Fly   329 --MYANIVLSGGTTMFRNIEHRFLQDLTEMAPPSIR--IKVNASPDRRFSVWTGGSVLASLTSFQ 389
              .:..:||:||:.....:..|..::|.:..|.||.  |:|...|....:.|.|..::::|:.|.
plant   389 DSWFKTVVLTGGSACLPGLSERLERELQDHLPSSISNGIRVIPPPYGVDTSWHGAKLISNLSIFP 453

  Fly   390 NMW 392
            ..|
plant   454 GPW 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp53DNP_477037.2 ASKHA_ATPase-like 47..406 CDD:483947 98/367 (27%)
ARP8NP_568836.2 F-box_AtARP8-like 42..86 CDD:438927
ASKHA_NBD_AtArp8-like 136..467 CDD:466847 98/365 (27%)
Blue background indicates that the domain is not in the aligned region.

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