DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp53D and si:ch211-241j12.3

DIOPT Version :9

Sequence 1:NP_477037.2 Gene:Arp53D / 36879 FlyBaseID:FBgn0011743 Length:411 Species:Drosophila melanogaster
Sequence 2:XP_017207998.2 Gene:si:ch211-241j12.3 / 566552 ZFINID:ZDB-GENE-040724-72 Length:1245 Species:Danio rerio


Alignment Length:365 Identity:191/365 - (52%)
Similarity:257/365 - (70%) Gaps:2/365 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 VVIDNGSGVCKAGFSPEDTPRAVFPSIVGRPRHLNVLLDSVIGDSVIGEAAARKRGILTLKYPIE 113
            :|:|:|||:.||||:.:|.|.||||:::|||::..|:...|..:..:|..|...||:|||:|||.
Zfish   881 IVLDSGSGLMKAGFADQDLPAAVFPTVIGRPKYEEVMNSCVDRELYVGHDAQHMRGVLTLRYPIR 945

  Fly   114 HGMVKNWDEMEMVWQHTYELLRADPMDLPALLTEAPLNPKKNREKMTEIMFEHFQVPAFYVAVQA 178
            ||:|.|||||||:|.|.::||.|.|.|.|.|||||.|||.:||::|.|:|||.|.||..:|||||
Zfish   946 HGVVSNWDEMEMLWTHAFQLLSAAPEDHPVLLTEAALNPLQNRQRMVELMFEAFSVPLTFVAVQA 1010

  Fly   179 VLSLYATGRTVGIVVDSGDGVTHTVPIYEGFALPHACVRVDLAGRDLTDYLCKLLLERGVTMGTS 243
            ||:|||:|||.|:|:||||||:|:||::||:.||||..|:||||.|:|..|.|||||.||.:.||
Zfish  1011 VLALYASGRTTGVVLDSGDGVSHSVPVFEGYCLPHAVQRLDLAGADVTLQLQKLLLESGVCLRTS 1075

  Fly   244 AEREIVREIKEKLCYVSMNYAKEMDLHGKVETYELPDGQKIVLGCERFRCPEALFQPSLLGQEVM 308
            ||.|||||:||:.|:||::|..||........|.||||..:.|..:|||.||.||:|.|:|::..
Zfish  1076 AELEIVREMKERCCFVSVDYEAEMKSSESEIQYTLPDGHTVPLASQRFRAPEILFRPELIGRDHY 1140

  Fly   309 GIHEATHHSITNCDMDLRKDMYANIVLSGGTTMFRNIEHRFLQDLTEMAPPSIR--IKVNASPDR 371
            |:||:...||...|:|||:....||:||||.|:...:..|...::..|.|..:.  ::|::.|||
Zfish  1141 GLHESVFRSILQSDLDLRRSFVGNILLSGGNTLLSGLAERLQLEVRAMVPLDLSACVRVSSPPDR 1205

  Fly   372 RFSVWTGGSVLASLTSFQNMWIDSLEYEEVGSAIVHRKCF 411
            .||||:||:.||||...|:.||.:.||||.|..||.||||
Zfish  1206 DFSVWSGGAALASLPEQQSAWISAAEYEEFGPQIVFRKCF 1245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp53DNP_477037.2 ACTIN 46..411 CDD:214592 189/363 (52%)
NBD_sugar-kinase_HSP70_actin 47..411 CDD:302596 189/363 (52%)
si:ch211-241j12.3XP_017207998.2 Neuromodulin_N <411..625 CDD:331332
ACTIN 878..1245 CDD:214592 189/363 (52%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11937
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.020

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