DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arp53D and actl6b

DIOPT Version :9

Sequence 1:NP_477037.2 Gene:Arp53D / 36879 FlyBaseID:FBgn0011743 Length:411 Species:Drosophila melanogaster
Sequence 2:XP_005170633.1 Gene:actl6b / 553775 ZFINID:ZDB-GENE-050522-191 Length:426 Species:Danio rerio


Alignment Length:428 Identity:149/428 - (34%)
Similarity:227/428 - (53%) Gaps:56/428 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 MSSEVDSNSHHAAVVIDNGSGVCKAGFSPEDTPRAVFPSIVG------RPRHLNVLLDSVIGDSV 94
            ||..|.......|:|.|.||...:||::.||.|:|.||:.:|      .|..:.|..:|..|.|.
Zfish     1 MSGGVYGGDEVGALVFDIGSFSTRAGYAGEDCPKADFPTTIGVNAEEEGPADMGVEQESNSGRSY 65

  Fly    95 IGEAAAR--KRGILTLKYPIEHGMVKNWDEMEMVWQHTY-ELLRADPMDLPALLTEAPLNPKKNR 156
            ..:..|.  .|..:.|..|:::||:::||..:.:..|.| :.::::|...|.|::|||.|.:..|
Zfish    66 YIDTTALHVPRAGVELISPLKNGMIEDWDAFQAIIDHIYSKHIKSEPGLHPVLMSEAPWNSRAKR 130

  Fly   157 EKMTEIMFEHFQVPAFYVAVQAVLSLYATGRTVGIVVDSGDGVTHT--VPIYEGFALPHACVRVD 219
            ||:||::|||:.:|||::...|||:.:|.||..|:|:||  |.|||  :|:::|:.|....|:..
Zfish   131 EKLTELIFEHYNIPAFFLCKTAVLTAFANGRATGLVLDS--GATHTTAIPVHDGYVLQQGIVKSP 193

  Fly   220 LAGRDLTDYLCK-LLLERGVTMGTS---AEREIVRE-------IKEKLCYVSMN----------- 262
            ||| |.....|: |..|..:....|   |.:|.|||       .|:||..||.:           
Zfish   194 LAG-DFISMQCRELFQEMNIDTVPSYMIASKEPVREGAPAMWTKKDKLPPVSKSWHTFMCNEVIQ 257

  Fly   263 -------------YAKEMDLHGKVETYELPDGQKIVLGCERFRCPEALFQPS----LLGQEVMGI 310
                         |.:::........||:|.|.....|.||.|.||.||.||    |.|..::|:
Zfish   258 DFQASVLQVSDSPYDEQVAAQMPTVHYEMPSGYSTDFGAERLRIPEGLFDPSNVKGLSGNTMLGV 322

  Fly   311 HEATHHSITNCDMDLRKDMYANIVLSGGTTMFRNIEHRFLQDLTEMAPPSIRIKV---NASPDRR 372
            ......||..||:|:|..:|.:::::||.|:.:....|..::|::.||||:|:|:   |:|.:||
Zfish   323 GHVVTTSIGMCDIDIRPGLYGSVIVTGGNTLLQGFTERLNRELSQKAPPSMRLKLIACNSSIERR 387

  Fly   373 FSVWTGGSVLASLTSFQNMWIDSLEYEEVGSAIVHRKC 410
            ||.|.|||:||||.:||.|||...||:|.|...|.|||
Zfish   388 FSSWIGGSILASLGTFQQMWISKQEYDEGGKQSVERKC 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp53DNP_477037.2 ACTIN 46..411 CDD:214592 146/418 (35%)
NBD_sugar-kinase_HSP70_actin 47..411 CDD:302596 146/417 (35%)
actl6bXP_005170633.1 NBD_sugar-kinase_HSP70_actin 10..425 CDD:302596 144/417 (35%)
Actin 11..426 CDD:278451 146/418 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.