DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp53D and acta1a

DIOPT Version :9

Sequence 1:NP_477037.2 Gene:Arp53D / 36879 FlyBaseID:FBgn0011743 Length:411 Species:Drosophila melanogaster
Sequence 2:NP_001017750.1 Gene:acta1a / 550445 ZFINID:ZDB-GENE-050417-267 Length:377 Species:Danio rerio


Alignment Length:369 Identity:234/369 - (63%)
Similarity:288/369 - (78%) Gaps:5/369 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 AVVIDNGSGVCKAGFSPEDTPRAVFPSIVGRPRHLNVLLDSVIGDSVIGEAAARKRGILTLKYPI 112
            |:|.|||||:.||||:.:|.||||||||||||||..|::.....||.:|:.|..|||||||||||
Zfish     9 ALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 73

  Fly   113 EHGMVKNWDEMEMVWQHT-YELLRADPMDLPALLTEAPLNPKKNREKMTEIMFEHFQVPAFYVAV 176
            |||::.|||:||.:|.|| |..||..|.:.|.||||||||||.||||||:||||.|.|||.|||:
Zfish    74 EHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAI 138

  Fly   177 QAVLSLYATGRTVGIVVDSGDGVTHTVPIYEGFALPHACVRVDLAGRDLTDYLCKLLLERGVTMG 241
            ||||||||:|||.|||:||||||||.||||||:|||||.:|:|||||||||||.|:|.|||.:..
Zfish   139 QAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFV 203

  Fly   242 TSAEREIVREIKEKLCYVSMNYAKEM----DLHGKVETYELPDGQKIVLGCERFRCPEALFQPSL 302
            |:|||||||:||||||||::::..||    ......::|||||||.|.:|.|||||||.|||||.
Zfish   204 TTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSF 268

  Fly   303 LGQEVMGIHEATHHSITNCDMDLRKDMYANIVLSGGTTMFRNIEHRFLQDLTEMAPPSIRIKVNA 367
            :|....||||.|::||..||:|:|||:|||.||||||||:..|..|..:::..:||.:::||:.|
Zfish   269 IGMGSAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEIAALAPSTMKIKIIA 333

  Fly   368 SPDRRFSVWTGGSVLASLTSFQNMWIDSLEYEEVGSAIVHRKCF 411
            .|:|::|||.|||:||||::||.|||...||:|.|.:|||||||
Zfish   334 PPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp53DNP_477037.2 ACTIN 46..411 CDD:214592 232/367 (63%)
NBD_sugar-kinase_HSP70_actin 47..411 CDD:302596 232/367 (63%)
acta1aNP_001017750.1 NBD_sugar-kinase_HSP70_actin 4..377 CDD:302596 232/367 (63%)
ACTIN 7..377 CDD:214592 232/367 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54227
OrthoDB 1 1.010 - - D283838at33208
OrthoFinder 1 1.000 - - FOG0000057
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.930

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