DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp53D and Actl6a

DIOPT Version :10

Sequence 1:NP_477037.2 Gene:Arp53D / 36879 FlyBaseID:FBgn0011743 Length:411 Species:Drosophila melanogaster
Sequence 2:NP_001034122.1 Gene:Actl6a / 361925 RGDID:1307747 Length:429 Species:Rattus norvegicus


Alignment Length:436 Identity:146/436 - (33%)
Similarity:227/436 - (52%) Gaps:69/436 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 MSSEVDSNSHHAAVVIDNGSGVCKAGFSPEDTPRAVFPSIVGRPRHLNVLLD--------SVIGD 92
            ||..|.......|:|.|.||...:||::.||.|:..||:.:|      |:|:        .:.||
  Rat     1 MSGGVYGGDEVGALVFDIGSYTVRAGYAGEDCPKVDFPTAIG------VVLERDDGSTMMEIDGD 59

  Fly    93 S--------VIGEAAAR-KRGILTLKYPIEHGMVKNWDEMEMVWQHTYEL-LRADPMDLPALLTE 147
            .        .|...|.| .|..:....|:::|||::||..:.:..|||:: ::::....|.|::|
  Rat    60 KGKQGGPTYYIDTNALRVPRESMEAISPLKNGMVEDWDSFQAILDHTYKMHVKSEASLHPVLMSE 124

  Fly   148 APLNPKKNREKMTEIMFEHFQVPAFYVAVQAVLSLYATGRTVGIVVDSGDGVTHT--VPIYEGFA 210
            ||.|.:..|||:||:||||:.:|||::...|||:.:|.||:.|:::||  |.|||  :|:::|:.
  Rat   125 APWNTRAKREKLTELMFEHYSIPAFFLCKTAVLTAFANGRSTGLILDS--GATHTTAIPVHDGYV 187

  Fly   211 LPHACVRVDLAGRDLTDYLCKLLLERGVTM---GTSAEREIVRE-------IKEKLCYVSMNYAK 265
            |....|:..|||..:|....:|..|..:.:   ...|.:|.|||       .||||..|:.::..
  Rat   188 LQQGIVKSPLAGDFITMQCRELFQEMNIELIPPYMIASKEAVREGSPANWKRKEKLPQVTRSWHN 252

  Fly   266 EM------DLHGKV------------------ETYELPDGQKIVLGCERFRCPEALFQPS----L 302
            .|      |....|                  ..||.|:|.....|.||.:.||.||.||    |
  Rat   253 YMCNCVIQDFQASVLQVSDSTYDEQVAAQMPTVHYEFPNGYNCDFGAERLKIPEGLFDPSNVKGL 317

  Fly   303 LGQEVMGIHEATHHSITNCDMDLRKDMYANIVLSGGTTMFRNIEHRFLQDLTEMAPPSIRIKV-- 365
            .|..::|:......|:..||:|:|..:|.:::::||.|:.::...|..::|::..|||:|:|:  
  Rat   318 SGNTMLGVSHVVTTSVGMCDIDIRPGLYGSVIVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIA 382

  Fly   366 -NASPDRRFSVWTGGSVLASLTSFQNMWIDSLEYEEVGSAIVHRKC 410
             |.:.:||||.|.|||:||||.:||.|||...||||.|...|.|||
  Rat   383 NNTTVERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp53DNP_477037.2 ASKHA_ATPase-like 47..406 CDD:483947 139/419 (33%)
Actl6aNP_001034122.1 ASKHA_NBD_Arp4_ACTL6-like 8..420 CDD:466846 138/419 (33%)

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