DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp53D and arp42

DIOPT Version :10

Sequence 1:NP_477037.2 Gene:Arp53D / 36879 FlyBaseID:FBgn0011743 Length:411 Species:Drosophila melanogaster
Sequence 2:NP_594546.2 Gene:arp42 / 2541496 PomBaseID:SPAC23D3.09 Length:424 Species:Schizosaccharomyces pombe


Alignment Length:437 Identity:114/437 - (26%)
Similarity:189/437 - (43%) Gaps:93/437 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 AVVIDNGSGVCKAGFSPEDTPRAVFPSIVGRPRHLNVLLDSVIGDSVIGEAAARKRGI---LTLK 109
            ::|||.||...:.|::.|::|..:.||..|                |..:...|.:.:   |.:.
pombe     6 SLVIDPGSCWTRFGYAGEESPMTILPSYYG----------------VRSDVTGRNKYVVDELQIH 54

  Fly   110 YPI---------EHGMVKNWDEMEMVWQH-TYELLRADPMDLPALLTEAPLNPKKNREKMTEIMF 164
            .||         .:|::::|:.....|:. ..|.|:.:|.:...::||...||:..|:::.|..|
pombe    55 APIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAF 119

  Fly   165 EHFQVPAFYVAVQAVLSLYATGRTVGIVVDSGDGVTHTVPIYEGFALPHACVRVDLAGRDLTDYL 229
            |...|||||:..|||...:|..::..::||.|.......|:.:|..:.....:..|||..|...:
pombe   120 EQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAGDFLNANI 184

  Fly   230 CKL-------------LLERGVTMGTSA------------------------------EREIVRE 251
            .:|             :..:.|.:..|.                              :|.::.|
pombe   185 EQLFNTMNIEFPPHYRIARKSVAIQQSGNMANGSADAVKPAVLYPPIQDLTSSYEIFQKRRVIEE 249

  Fly   252 IKEKLCYV---SMNYAKEMDLHGKVETYELPDGQKIVLGCERFRCPEALFQPSLLG--------- 304
            .||.:..|   ..:.||....:.|  .:|.|||.....|.||||..|.||.||...         
pombe   250 WKESVLDVLDTPFDEAKASSRNPK--PFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPP 312

  Fly   305 QEVMGIHEATHHSITNCDMDLRKDMYANIVLSGGTTMFRNIEHRFLQDLTEMAPPSIRIKVNASP 369
            |..:|:||..:.||..||.:||..:..|||::|||::...:..|...::..:|..| ||.|:.:.
pombe   313 QGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGS-RINVHTAE 376

  Fly   370 DRRF---SVWTGGSVLASLTSFQNMWIDSLEYEEVG---SAIVHRKC 410
            ....   :||.|||:||||.:||::|:...||:|||   :..|.::|
pombe   377 TASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVGVDRALFVEKRC 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp53DNP_477037.2 ASKHA_ATPase-like 47..406 CDD:483947 112/431 (26%)
arp42NP_594546.2 ASKHA_NBD_Arp4_ACTL6-like 2..412 CDD:466846 110/424 (26%)

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