DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5348 and slc24a6a

DIOPT Version :9

Sequence 1:NP_611156.3 Gene:CG5348 / 36877 FlyBaseID:FBgn0034156 Length:625 Species:Drosophila melanogaster
Sequence 2:XP_009289475.1 Gene:slc24a6a / 561209 ZFINID:ZDB-GENE-100922-39 Length:639 Species:Danio rerio


Alignment Length:623 Identity:123/623 - (19%)
Similarity:226/623 - (36%) Gaps:177/623 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 INQFQEMIF---------IALFVAFCFQILVLLIYTI----NVYYSPALKAVSRFLHMNEHLAGV 125
            |::|.:.||         |.|.| ||   .|.:.|.:    :|::.|:|:.:...||::|.:||.
Zfish    89 IHEFPQDIFTKGQRRHGAILLHV-FC---AVYMFYALAIVCDVFFVPSLEKICENLHLSEDVAGA 149

  Fly   126 TLMAFGNTSADFFANLASVERHVPVFANN--------LSSALFVITISGGL--IFYISPFKMNSY 180
            |.||.|:::.:.|.:|      :.||...        :.||:|.|.:..|:  ||......:..:
Zfish   150 TFMAAGSSAPELFTSL------IGVFITKGDLGVGTIVGSAVFNILVIIGVCGIFAGQTITLTWW 208

  Fly   181 ETVRDILFLLLATLLMDYFAYTTNHFALGYEFKFFIVLLVY-------ISYIIINVADVYLL--- 235
            ...||.:|.:|:.|.                    ::|::|       .:.|:|::..||:|   
Zfish   209 PLFRDSIFYILSVLA--------------------LILIIYDEKVIWWETIILISMYGVYILIMK 253

  Fly   236 -----------------QKTIASTRTKMQKLLDEKQTPEIALKLQDLERKLEYYSQDTRVEILEK 283
                             |..:.|:..:...:  .:.:|.....:..|::......||:.|.::::
Zfish   254 FNSQIWGWVEQRFGIPGQPCLVSSLRRDVSV--GEASPHCDTSMILLKKGQNAGGQDSPVVMVDE 316

  Fly   284 SSSISITRIRYT--TMRMIRNPRVSVNRR--------YTRNMKLDYTQS---------------- 322
            ..|:...:..::  ::|::..|..|...|        .|...:|...:|                
Zfish   317 LMSLHPHQFSFSEASLRVMITPHFSPRTRLSMAGRMLITERQRLIRNRSPGDSSGSGAGDTPGQD 381

  Fly   323 -----------KNQGIFRDFFLALRPIKCQAWKQAELLNRVLLLIRAPAVVICTLYIPLVDYEME 376
                       :|.|........|...:.::  |...|.||       |.:..|.  |..|.|.|
Zfish   382 GPGMEAVPWGLENGGALESETQPLEEPRRRS--QGGELERV-------ADIEDTQ--PKDDEEDE 435

  Fly   377 KHGWNKLLNAINVVVNPALSISIFLSFMHRKGNFLWYISLQNTLIYGASSFVLTVPFAVFILFHA 441
            :....:......|...         .:...|..|.|.:|   .|:|      .|||..|      
Zfish   436 EEADEEPFRPFTVPEG---------RWEQAKWMFSWPLS---CLLY------YTVPNCV------ 476

  Fly   442 RTDVPPSYHWVFTIMNLTGSMFLIFLCATEIDTVLEVIGNILSIDDNYMGATVKAFTGNLGTLFA 506
               :|....|.  ::....|...|.:.:..:..::.:|...|.|.|..||.|..|...::....|
Zfish   477 ---LPRWERWF--MVTFVASTLWIAVFSYLMVWMVTIISFTLDIPDVVMGITFLAAGTSVPDCMA 536

  Fly   507 NTAVAIHGYPKMAFASAIGGSFFTIVVTGNTVAYVRSLVGNRSEHHMEEYGEIAFIFLNMALFTI 571
            :..||..|...||.:::||.:.|.|::.......:|:||        .:||....|.....::::
Zfish   537 SLIVARQGMGDMAVSNSIGSNIFDILLGLGFPWALRTLV--------VDYGSTVSINSKGLVYSV 593

  Fly   572 LL-----WSTTLGFFAR-----RSMGLYSIGLYVVYLL 599
            :|     :.|.|.....     |.:||..:.||.::||
Zfish   594 ILLLASVFLTVLSVHLNHWRLDRRLGLGLMFLYAIFLL 631

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5348NP_611156.3 Na_Ca_ex 86..>186 CDD:279963 29/113 (26%)
Na_Ca_ex 458..603 CDD:279963 36/152 (24%)
slc24a6aXP_009289475.1 Na_Ca_ex <85..637 CDD:332332 123/623 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0530
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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