DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5348 and slc24a4b

DIOPT Version :9

Sequence 1:NP_611156.3 Gene:CG5348 / 36877 FlyBaseID:FBgn0034156 Length:625 Species:Drosophila melanogaster
Sequence 2:XP_002665845.2 Gene:slc24a4b / 100334346 ZFINID:ZDB-GENE-081031-75 Length:636 Species:Danio rerio


Alignment Length:615 Identity:122/615 - (19%)
Similarity:218/615 - (35%) Gaps:195/615 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 CDLKCINQFQEMIF---------IALFVAFCFQILVLLIYTINVYYSPALKAVSRFLHMNEHLAG 124
            |....|::|.:.:|         :.|.:.....:.:.|....:.|:..:|:.:...|:::|.:||
Zfish   130 CTEPAIHEFPDDVFTNAERKSGAVLLHIIAALYMFLALAIVCDDYFVTSLEKICEKLNLSEDVAG 194

  Fly   125 VTLMAFGNTSADFFANLASVERHVPVFANN--------LSSALF----VITISGGLIFYISPFKM 177
            .|.||.|:::.:.||::      :.||..:        :.||:|    :|.:.|  ||......:
Zfish   195 ATFMAAGSSAPELFASV------IGVFITHGDVGVGTIVGSAVFNILCIIGVCG--IFAGQVVLL 251

  Fly   178 NSYETVRDILFLLLATLLMDYFAYTTNHFALGYEFKFFIVLLVYISYIIINVADVYLLQKTIAST 242
            ..:...||..|.:|:.:.:..|.|  :...:.:|  ..:::::|..||:            |...
Zfish   252 TWWAVFRDSFFYILSVVALIVFIY--DEKIVWWE--SLVLVVMYACYIL------------IMKF 300

  Fly   243 RTKMQKLLDEKQTPEIA-------LKLQDLERKLEYYSQDTRVEILEKSSSISITRIRY------ 294
            .:::||....|....:|       .:|:|::.. :.||:.: |.::::..:.|....|:      
Zfish   301 NSRLQKFFTRKGNKNVANGNAAAGSELEDVKTS-KIYSRGS-VVMVDEIINASPPNYRFPEAGLR 363

  Fly   295 ----------TTMRMIRNPRVSVNRRYTR-------------------NMKLD-YTQSKNQGIFR 329
                      |.:||.....::..:|..:                   |:..| .|:.|...:..
Zfish   364 VMVTNHFGPKTRLRMASRLIITERQRLVQSANGVETAVVDGKPDIENGNVPEDKSTEEKESELTT 428

  Fly   330 DFFLALRPIKCQAWKQAELLNRVLLLIRAPAVVICTLYIPLVDYEMEKHGWNKLLNAINVVVNPA 394
            .|.|   |..|        :||...||..|.::|....||    ...|..|.|            
Zfish   429 PFRL---PDGC--------MNRTKWLISWPLLLILFFTIP----NCAKSRWEK------------ 466

  Fly   395 LSISIFLSFMHRKGNFLWYISLQNTLIYGASSFVL-TVPFAVFILFHARTDVPPSYHWVFTIMNL 458
                                       |...||:| ||..|||..|..         |:.||   
Zfish   467 ---------------------------YFMLSFILSTVWIAVFSYFMV---------WMVTI--- 492

  Fly   459 TGSMFLIFLCATEIDTVLEVIGNILSIDDNYMGATVKAFTGNLGTLFANTAVAIHGYPKMAFASA 523
                                ||..|.|.|..||.|..|...::....|:..||..|...||.::.
Zfish   493 --------------------IGYTLGIPDVIMGITFLAAGTSVPDCIASLIVARQGLGDMAVSNT 537

  Fly   524 IGGSFFTIVVTGNTVAYVRSLVGNRSEHHMEEYGEIAFIFLNMALFTILLW-----STTLGFFAR 583
            ||.:.|.|:|.......::::..|        ||.:..|.....|::::|.     .|.||....
Zfish   538 IGSNVFDILVGLGVPWALQTMAVN--------YGSVVMINSRGLLYSVVLLLGSVALTILGIHLN 594

  Fly   584 R-----SMGLYSIGLYVVYLLFVTLVHEEV 608
            .     .:|:|.:.||.|:|.|..::...|
Zfish   595 HWKLDFKLGVYVLLLYAVFLCFSIMIEYNV 624

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5348NP_611156.3 Na_Ca_ex 86..>186 CDD:279963 23/111 (21%)
Na_Ca_ex 458..603 CDD:279963 36/154 (23%)
slc24a4bXP_002665845.2 TIGR00367 155..581 CDD:273039 107/545 (20%)
Na_Ca_ex 156..298 CDD:279963 32/165 (19%)
Na_Ca_ex 467..619 CDD:279963 49/191 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0530
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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