DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG15617 and Pdlim2

DIOPT Version :10

Sequence 1:NP_611151.1 Gene:CG15617 / 36871 FlyBaseID:FBgn0034151 Length:222 Species:Drosophila melanogaster
Sequence 2:NP_666090.1 Gene:Pdlim2 / 213019 MGIID:2384850 Length:349 Species:Mus musculus


Alignment Length:231 Identity:44/231 - (19%)
Similarity:77/231 - (33%) Gaps:84/231 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 AMWGMEVTGGIDQFEPLTIVNVSPTGLAKRGGMRVGDEITQINDVPALEMTFNEALQMFRKNSRY 105
            |.||..::||.|...|:.:..|:..|.|:...:|.||.|..||...|..|...||....|:::..
Mouse    11 APWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASP 75

  Fly   106 VRVYV-RGDDDAPGEEDWTCDCWFKPRKPWRRDFTPIQWTFPWNDRRKPVYKESNCFMVPSKMEE 169
            :|:.: |....:||:.:                                  .|.:..::.::.:.
Mouse    76 LRLQLDRSQTASPGQTN----------------------------------GEGSLEVLATRFQG 106

  Fly   170 KIRARRAATS-----------------------------AVHKKDELAPHTRSLTPTP------- 198
            .:|..|.:.|                             |:.|:|.:....:|||.:|       
Mouse   107 SLRTHRDSQSSQRSACFSPVSLSPRPCSPFSTPPPTSPVALSKEDMIGCSFQSLTHSPGLAAAHH 171

  Fly   199 -----RPKNQ------PGPNLLETVLRPRGPP--PR 221
                 .|.:|      |..:.:..:|...|.|  ||
Mouse   172 LTYPGHPTSQQAGHSSPSDSAVRVLLHSPGRPSSPR 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15617NP_611151.1 PDZ_canonical 43..111 CDD:483948 21/68 (31%)
Pdlim2NP_666090.1 PDZ_PDLIM-like 4..82 CDD:467235 22/70 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 74..147 8/106 (8%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 169..212 8/39 (21%)
DUF4749 <198..252 CDD:464948 4/10 (40%)
LIM_Mystique 283..335 CDD:188833
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.