DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Picot and vglu-3

DIOPT Version :9

Sequence 1:NP_725600.1 Gene:Picot / 36865 FlyBaseID:FBgn0024315 Length:529 Species:Drosophila melanogaster
Sequence 2:NP_499277.1 Gene:vglu-3 / 176442 WormBaseID:WBGene00011556 Length:544 Species:Caenorhabditis elegans


Alignment Length:555 Identity:146/555 - (26%)
Similarity:239/555 - (43%) Gaps:89/555 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 WNQRNLHESLEQQPQRCF--ATRYFVTFMLFLGMANAYVMRTNMSVAIVAMVNHTAIKSGEAEEY 82
            |..:...:::.:| ::.|  ..|:.:..:...|.|.::.:|:|..||...|||:.....||..| 
 Worm    26 WEHKEQLQTITEQ-KKFFLRKVRWQIAILAHFGFAISFGIRSNFGVAKNRMVNNFTDAYGEVHE- 88

  Fly    83 DDECGDRDIPIDDSQDGEFAWSSALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINS 147
                            .||.|:.|..|.:.|||||||..:|||.|:||.|:...:....|:|:.|
 Worm    89 ----------------REFLWTGAEVGMMESSFFYGYAASQIPAGVLAAKFAPNKIFMLGILVAS 137

  Fly   148 VFAFLVPVAARGGGVWGL--CAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQFG 210
            ....|..::........:  ..|:.:|||..|.:.|..|.:...|.||.|||::....:.|:..|
 Worm   138 FMNILSAISFNFHPYTDIFVMVVQAVQGLALGVLYPAMHGVWKFWAPPLERSKLATTAFTGSSVG 202

  Fly   211 TIISMPLSGLLAEYGFDGGWPSIFYVFGIVGTVWSIAFLIFVHEDPSSHPTIDEREKKYINDSLW 275
            .:..:|.|..|..:   ..|.:.|||||:||.:||:.::......|.:|..|.:.|||.:.:.: 
 Worm   203 VMTGLPASAYLVSH---FSWSTPFYVFGVVGIIWSLIWMYVSSHSPETHGYISDDEKKQVTEKI- 263

  Fly   276 GTDVVKS---PPIPFKAIIKSLPFYAILFAHMGHNYGYETLMTELPTYMKQVLRFSLKSNGLLSS 337
            |...||:   ..:|::.::.|...:||:......::|:..|:....||||.||...:|::|.:|.
 Worm   264 GDVAVKNMSLTTLPWRDMMTSSAVWAIIICTFCRSWGFFLLLGNQLTYMKDVLHIDIKNSGFISI 328

  Fly   338 LPYLAMWLFSMFISVVADWMISSKRFSHTATRKLINSIGQYGPGVALIAASYTGC-----DRALT 397
            .|...|.:.::....:.|::.||.:.|..|.||.:|:.|      ..:.|...||     |..:.
 Worm   329 FPQFGMCIVTLATGQLCDYLRSSGKMSTEAVRKSVNTFG------FTVEAMMLGCLAFVRDPVIA 387

  Fly   398 LAILTIGVGLNGGIYSGFKINHLDLTPRFAGFLMSITNCSANLAGLLAPIAAGHLISDP---SKP 459
            :..|.|....:|.:.|||.:||.|:.||:|..||.|.|      ||.|....|.::::.   ..|
 Worm   388 VTCLVIACTGSGSVLSGFNVNHFDIAPRYAPILMGIAN------GLGAVAGVGGMVTNTVTYQNP 446

  Fly   460 MMGQWQIVFFIAAFVYIICGTFYNIFGSGERQYWDN----------------------------- 495
              ..|:.||.:|..:.|....|:.||..|:...|..                             
 Worm   447 --DGWKWVFLLAMAIDIFGVIFFLIFAKGDVLPWAREPEKEETFNEFVRRMSIKVRSLSRKTRNR 509

  Fly   496 ---------PEDDEQKPALQTTVTTSPARLSNGST 521
                     .||.|.||..:.....:||..|..|:
 Worm   510 EGDTSYEKMEEDSEMKPCSKKVEARAPAEKSESSS 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PicotNP_725600.1 2A0114euk 41..501 CDD:129972 135/510 (26%)
MFS 100..485 CDD:119392 117/397 (29%)
vglu-3NP_499277.1 2A0114euk 47..485 CDD:129972 134/472 (28%)
MFS 52..471 CDD:119392 130/453 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160160216
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2532
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53923
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000034
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.750

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