DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Picot and slc-17.6

DIOPT Version :9

Sequence 1:NP_725600.1 Gene:Picot / 36865 FlyBaseID:FBgn0024315 Length:529 Species:Drosophila melanogaster
Sequence 2:NP_490947.2 Gene:slc-17.6 / 171781 WormBaseID:WBGene00017398 Length:546 Species:Caenorhabditis elegans


Alignment Length:474 Identity:125/474 - (26%)
Similarity:211/474 - (44%) Gaps:57/474 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 VMRTNMSVAIVAMVNHTAIKSGEAEEYDDECGDRDIPIDDSQDGEFAWSSALQGYILSSFFYGYV 120
            :|||...:|:|.:|     :||....:.|.              ...||...|..|.:||:.|..
 Worm    42 LMRTCFGMAMVDIV-----RSGNGTFHPDL--------------HMEWSGDEQANIHTSFYIGAF 87

  Fly   121 ITQIPFGILAKKYGSLRFLGYGMLINSVFAFLVPVAA---RGGGVWGLCAVRFIQGLGEGPIVPC 182
            |...|...||||.|....|.:.:|:|...:.|.|.:|   |  ..:.:.|:|.|.|.|.|.::|.
 Worm    88 IAVFPSEFLAKKLGPKNLLSFALLLNIFGSLLTPFSAIYLR--SYFPVAAIRLIMGFGYGFVIPA 150

  Fly   183 THAMLAKWIPPNERSRMGAAVYAGAQFGTIISMPLSGLLAEYGFDGGWPSIFYVFGIVGTVWSIA 247
            ...:::.|.|.:|:|...|....|.|.|..:||.|:..|.:..|..|||.:|.|:|::|.|    
 Worm   151 GSVLISSWFPLSEKSTAMAIFTTGNQIGIAVSMFLTAKLCQLHFFEGWPLVFIVYGLIGAV---- 211

  Fly   248 FLIFVHEDPSSHPTIDEREKKYINDSLWGTDVV-----KSPPIPFKAIIKSLPFY---------A 298
            ||:..|...:..|    ||.|||.    .|::.     |......:.|:::.|:.         |
 Worm   212 FLVIWHVRLADKP----RESKYIT----ATELTYIKGGKQRRNRAETIVRATPYMKIILNGCVCA 268

  Fly   299 ILFAHMGHNYGYETLMTELPTYMKQVLRFSLKSNGLLSSLPYLAMWLFSMFISVVADWMISSKRF 363
            |.......::....|:|.||.|.:...:.:|..||:.||||:....:..:..:::|| .:..::.
 Worm   269 ICACSFAQSFVLVALVTYLPKYNQIAFKMNLTHNGIWSSLPFFIQMITKLLFAIIAD-KVKQRKV 332

  Fly   364 SHTATRKLINSIGQYGPGVALIAASYTGCDRA--LTLAILTIGVGLNGGIYSGFKINHLDLTPRF 426
            :.||..|:.|:|..:...:.::.|:|...|.|  :.|:|: :.:........|:..:.:.:.|:|
 Worm   333 NATAVTKVSNAIASFASAIFIVIAAYGPFDSAELVQLSII-VSMAAFSAYVPGYNTSIVTVAPQF 396

  Fly   427 AGFLMSITNCSANLAGLLAPIAAGHLISDPSKPMMGQWQIVFFIAAFVYIICGTFYNIFGSGERQ 491
            ..|:.|.....|.:|..||||..|.:.|..:   :.:|:..|:..|.|..:.|..:.|||.|..:
 Worm   397 TAFISSYAQLYAQIASTLAPIVIGRITSHGT---IYEWKCAFYSLAGVLAVTGLIFQIFGHGRTE 458

  Fly   492 YWDNPEDDEQKPALQTTVT 510
            .|.....:.....|.|:||
 Worm   459 PWGETPSNATSARLSTSVT 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PicotNP_725600.1 2A0114euk 41..501 CDD:129972 121/463 (26%)
MFS 100..485 CDD:119392 107/403 (27%)
slc-17.6NP_490947.2 MFS 30..453 CDD:391944 117/448 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D619250at2759
OrthoFinder 1 1.000 - - FOG0000034
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11662
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X142
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.020

Return to query results.
Submit another query.