DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nach and scnn1b

DIOPT Version :9

Sequence 1:NP_001334724.1 Gene:Nach / 36864 FlyBaseID:FBgn0024319 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_001072437.1 Gene:scnn1b / 779891 XenbaseID:XB-GENE-949109 Length:646 Species:Xenopus tropicalis


Alignment Length:640 Identity:123/640 - (19%)
Similarity:238/640 - (37%) Gaps:186/640 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 GYLRR---TWSDFCATSSIHGLKYTRDEDTNKIVHLVWLLISVV----MFICAVVMARTFYMDYR 78
            ||..:   .|  ||..::.||.|....|...|  .::|.::::|    :|....|:..| |:.|.
 Frog    25 GYTYKELLVW--FCDNTNTHGPKRIIKEGPKK--RVMWFILTLVFAGLVFWQWGVLILT-YLSYG 84

  Fly    79 SSPTRMNVESDNTPVNRLYFPPVTICPDVLFNMQKSEAFLNTLRLPKGAELRGILRKLHIFYGFM 143
            .|      .|.:.....:.||.||:|        .:..:       |.:.::.:|:.|.......
 Frog    85 VS------VSLSIGFKTMEFPAVTVC--------NANPY-------KYSRVKPLLKDLDALVATA 128

  Fly   144 LDDERYSAEDIEQMEALLFL-----NNLTIPEFVEHLRWN------CDEILYRCRFNGEIMDCSK 197
            ||..::|::|    :|..|.     .|:|:    :...||      .||..........|.|.:.
 Frog   129 LDRIQFSSQD----QANTFTQSSTNQNVTL----DPTLWNHIPLVVIDETDPSNPIVNNIFDNNA 185

  Fly   198 IFQLSKTF-------FGHCCSFNLRQKGWVNNK-----------LNNLESFKVFHLNS------- 237
            |:..:.:|       ..:...:.:..|...||.           :..|:.:.:..|:|       
 Frog   186 IYSKNNSFRNSSEDQTSYSQRYKVAMKLCTNNNTQCVYRNFTSGIQALQEWYLLQLSSIFSNVPL 250

  Fly   238 -----LNFTAQRAI-----GG-------------LRYGLSVVVRYKDDNYDPLQSYS----YGVK 275
                 :.|.|:..|     ||             ..||...:..:..:..||:.|.:    :|:|
 Frog   251 ADRIAMGFKAEDLILTCLFGGQPCSYRNFTRIYDADYGNCYIFNWGQEGEDPMASANPGADFGLK 315

  Fly   276 LL--IQEADAFP--SAHSAAKFIAFNSETFAAVRPQETFCSSAVK---ALIIEE--------RNC 325
            |:  |::.:..|  ...:||:.|.....:|..|:....:.....:   |:::::        .:|
 Frog   316 LVLDIEQGEYLPYVQTTAAARLILHQQRSFPFVKDLGIYAMPGTETSIAVLVDQLEHMEAPYSSC 380

  Fly   326 -VFQNEFPMR-----YFSDYVYPNCELNCRVTNMVKFCGCHTYFFDFNRTSDRICT---FRD-IP 380
             |..::.|::     :.|.|...:|..:|....||:.|||..|.:.....|: .|:   :.| :|
 Frog   381 TVNGSDIPVQNLYAEFNSSYSIQSCLRSCYQEQMVQTCGCADYQYPLPNGSE-YCSNDKYPDWVP 444

  Fly   381 C---LVDNFGRLLLICSKYSDFNRLLSANIITRKKSTQCYCPLTCEHIDYD--VQLTNFP----- 435
            |   |.|:                      :..::|....|...|....|.  :.:.::|     
 Frog   445 CYYGLRDS----------------------VADRESCISLCQQPCNDTQYKMVISMADWPSAGAQ 487

  Fly   436 ---LELNMPVADKFYSGLAKNDGV--LHVFINSFSYRRLRRDLLSNMVTLVSNLGSAFSLFVGMS 495
               ..:.....|..::.....:|:  |:::...|:||.:.....:|:|.|:||||..|..::|.|
 Frog   488 DWIFHVLSYEKDSSHNITVNRNGIVRLNIYFQEFNYRSITESEATNVVWLLSNLGGQFGFWMGGS 552

  Fly   496 MLSVVEIIYYFSVILRKNYKLECE--TRSQMLHKKPKFAWPKANDTHSKEQKSVF 548
            :|.::|    |..|:     ::|.  |..::|      ||.|  |...:.|::.:
 Frog   553 VLCIIE----FGEII-----IDCVWITILKLL------AWIK--DRRQRRQRAQY 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NachNP_001334724.1 None
scnn1bNP_001072437.1 ENaC 27..632 CDD:273304 121/638 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm48391
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.