DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nach and scnn1gl

DIOPT Version :9

Sequence 1:NP_001334724.1 Gene:Nach / 36864 FlyBaseID:FBgn0024319 Length:553 Species:Drosophila melanogaster
Sequence 2:XP_017947701.2 Gene:scnn1gl / 101734161 XenbaseID:XB-GENE-22061126 Length:481 Species:Xenopus tropicalis


Alignment Length:485 Identity:103/485 - (21%)
Similarity:190/485 - (39%) Gaps:98/485 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 VMFICAVVMARTFYMDYRSSPTRMNVESDNTPVN--RLYFPPVTICPDVLFNMQKSEAFLNTLRL 123
            :::.|:.:.|.  ::.|   ||:..|    |.||  ||.||.:|.|.            ||..|:
 Frog     1 MLWQCSQLTAT--FLRY---PTQEKV----TLVNSARLPFPAITFCN------------LNRARM 44

  Fly   124 PK--GAELRGILRKLHIFYGFMLDDERYSAEDIEQMEALLFLNNLTIPEFVEHLRWNCDEILYRC 186
            .|  .::.:.:...|....|  .:.|..|............|:.||..|.:| |....:.:|..|
 Frog    45 SKLNSSKYQSLTEYLSFTSG--NESEEGSISHGRDRNFTFALSQLTPQEQME-LGHQLENMLISC 106

  Fly   187 RFNGEIMDCSKIFQLSKTFFGHCCSFNLRQKG----WVNNKLNNLESFKVFHLNSLNFTAQRAIG 247
            .|:.|:.:.|..........|.|.:||.|::.    |.|.:...       :||:..       .
 Frog   107 IFHDEVCNESFFTPFLNPKLGICYTFNGRRQADLQHWQNYQQEE-------YLNATK-------A 157

  Fly   248 GLRYGLSVVVRYKDDNYDPLQSYSYGVKLLIQEADAFPSAHSAAKFIAFNSETFAAV------RP 306
            |..|||::.:..:...|....|.:.|:::::......|........:....|:...:      |.
 Frog   158 GFSYGLTMELFIEQSEYISSLSTTAGLRVVLHGQGKMPFPEDEGVNVPPGQESDIGIVKVHVKRL 222

  Fly   307 QETFCSSAVKALIIEERNCVFQNEFPMRYFSDYVYPNCELNCRVTNMVKFCGCHTYFFDFNRTSD 371
            ||.:.|.......|       :|.:...|.:||....|:.:|....|:|.|||..:.|.....|:
 Frog   223 QEPYSSKCSNGNDI-------RNFYTDVYGTDYSRETCKKSCAQAKMIKNCGCRMWEFPEPPGSN 280

  Fly   372 -RICTFRDIPCLVDNFGRLLLICSKYSDFNRLLSANIITRKKSTQCYCPLTCEHIDYDVQLTN-- 433
             .:|...: |.:..        |.:..::.  ||.:      ..:|:|||.||...:::.|::  
 Frog   281 VPLCNISE-PSVNH--------CVEMYEYK--LSHD------QLKCHCPLQCEEEIFELTLSSSQ 328

  Fly   434 FPLELNMPVADK-------FYSGLAKNDGVLHVFINSFSYRRLRRDLLS-----NMVTLVSNLGS 486
            :|..:.:....|       |.|..:..|.|:.|.:   .|::|..:|:.     .:|.|.|::|.
 Frog   329 WPSSMYLDSFTKRLQSRKGFQSAQSIRDNVVKVVV---YYQQLNYELIEEVPSMQLVDLFSSIGG 390

  Fly   487 AFSLFVGMSMLSVVE----IIYYFSVILRK 512
            ...|::|:|:.:|.|    |:...:.::|:
 Frog   391 LVGLWIGVSVCTVAEFLELILNLLTFVIRQ 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NachNP_001334724.1 None
scnn1glXP_017947701.2 ASC 1..450 CDD:413546 103/485 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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